Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23464 | 3' | -57.4 | NC_005259.1 | + | 42644 | 0.68 | 0.547965 |
Target: 5'- aCCUCGgccccgaugugggCGGcCACgCGGCugcuguuGGCGAUCUCGa -3' miRNA: 3'- -GGAGCa------------GCC-GUG-GCCG-------CUGCUAGAGU- -5' |
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23464 | 3' | -57.4 | NC_005259.1 | + | 43184 | 0.71 | 0.435352 |
Target: 5'- ---aGUCGGUACCgaccucGGCGGCGAUgUCGa -3' miRNA: 3'- ggagCAGCCGUGG------CCGCUGCUAgAGU- -5' |
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23464 | 3' | -57.4 | NC_005259.1 | + | 47110 | 0.69 | 0.542843 |
Target: 5'- cCCaCGUCuGGaaACCGGCGAUGAUUUCc -3' miRNA: 3'- -GGaGCAG-CCg-UGGCCGCUGCUAGAGu -5' |
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23464 | 3' | -57.4 | NC_005259.1 | + | 49565 | 0.69 | 0.532647 |
Target: 5'- gUUCGUCGGUcguggccagACCGGCGgGCGGggUCAg -3' miRNA: 3'- gGAGCAGCCG---------UGGCCGC-UGCUagAGU- -5' |
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23464 | 3' | -57.4 | NC_005259.1 | + | 51674 | 0.7 | 0.473122 |
Target: 5'- --gCGUCgGGCACgGGCGcgcgAUGGUCUCAu -3' miRNA: 3'- ggaGCAG-CCGUGgCCGC----UGCUAGAGU- -5' |
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23464 | 3' | -57.4 | NC_005259.1 | + | 51781 | 0.67 | 0.636642 |
Target: 5'- gCCUUGagguauUCGGCGCuCGGCGGguCGGUCagcUCAg -3' miRNA: 3'- -GGAGC------AGCCGUG-GCCGCU--GCUAG---AGU- -5' |
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23464 | 3' | -57.4 | NC_005259.1 | + | 55333 | 0.67 | 0.626126 |
Target: 5'- gUCUUGgCGGCAgCGGUGGCGAUg--- -3' miRNA: 3'- -GGAGCaGCCGUgGCCGCUGCUAgagu -5' |
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23464 | 3' | -57.4 | NC_005259.1 | + | 56655 | 0.68 | 0.605119 |
Target: 5'- -aUCGagGGCACCGcGCGucACGggCUCGu -3' miRNA: 3'- ggAGCagCCGUGGC-CGC--UGCuaGAGU- -5' |
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23464 | 3' | -57.4 | NC_005259.1 | + | 58161 | 0.72 | 0.349135 |
Target: 5'- aCUCGUCGGCGCaCGGgaucuCGACGcacGUCUUg -3' miRNA: 3'- gGAGCAGCCGUG-GCC-----GCUGC---UAGAGu -5' |
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23464 | 3' | -57.4 | NC_005259.1 | + | 58386 | 0.67 | 0.657652 |
Target: 5'- gCUcCGaCGGUgcgcaccagccACCGGCGGCGAUCa-- -3' miRNA: 3'- gGA-GCaGCCG-----------UGGCCGCUGCUAGagu -5' |
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23464 | 3' | -57.4 | NC_005259.1 | + | 58735 | 0.73 | 0.303557 |
Target: 5'- -gUCGUUGGCACCGGCaccGGCGAagUUCGg -3' miRNA: 3'- ggAGCAGCCGUGGCCG---CUGCUa-GAGU- -5' |
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23464 | 3' | -57.4 | NC_005259.1 | + | 58913 | 0.67 | 0.668129 |
Target: 5'- gCUCGUCGGCGgucuugucgUCGGCGggcGCGGUggCAg -3' miRNA: 3'- gGAGCAGCCGU---------GGCCGC---UGCUAgaGU- -5' |
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23464 | 3' | -57.4 | NC_005259.1 | + | 58979 | 0.69 | 0.542843 |
Target: 5'- gCUCGUCGGCGaCGGCGAgcuUGGccuUUUCAc -3' miRNA: 3'- gGAGCAGCCGUgGCCGCU---GCU---AGAGU- -5' |
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23464 | 3' | -57.4 | NC_005259.1 | + | 60551 | 0.75 | 0.232154 |
Target: 5'- gCUCGUCGGCAugcCCGGUgccGACGGUCa-- -3' miRNA: 3'- gGAGCAGCCGU---GGCCG---CUGCUAGagu -5' |
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23464 | 3' | -57.4 | NC_005259.1 | + | 61431 | 0.67 | 0.647153 |
Target: 5'- cCCUUG-CGggcGCGCCGGU--CGAUCUCAu -3' miRNA: 3'- -GGAGCaGC---CGUGGCCGcuGCUAGAGU- -5' |
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23464 | 3' | -57.4 | NC_005259.1 | + | 61562 | 0.71 | 0.417132 |
Target: 5'- gCCgacaCGGCACCGGCaguuGAgGAUCUCAu -3' miRNA: 3'- -GGagcaGCCGUGGCCG----CUgCUAGAGU- -5' |
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23464 | 3' | -57.4 | NC_005259.1 | + | 61728 | 0.7 | 0.473122 |
Target: 5'- aCCUUGUCGaGCAggugugcguCCGGCGA-GAUCUg- -3' miRNA: 3'- -GGAGCAGC-CGU---------GGCCGCUgCUAGAgu -5' |
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23464 | 3' | -57.4 | NC_005259.1 | + | 62689 | 0.67 | 0.626126 |
Target: 5'- uCCUCGagugCGGUgucccauCCGGCGAUcaggcggggGAUCUCGc -3' miRNA: 3'- -GGAGCa---GCCGu------GGCCGCUG---------CUAGAGU- -5' |
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23464 | 3' | -57.4 | NC_005259.1 | + | 63675 | 0.69 | 0.532647 |
Target: 5'- aCCUCG--GGCACCGGCGcgccgGgGAUCUg- -3' miRNA: 3'- -GGAGCagCCGUGGCCGC-----UgCUAGAgu -5' |
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23464 | 3' | -57.4 | NC_005259.1 | + | 63933 | 0.66 | 0.709635 |
Target: 5'- aCUCGUgGGUcuuaccguCCGGCaGCGAgaUCUCGg -3' miRNA: 3'- gGAGCAgCCGu-------GGCCGcUGCU--AGAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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