miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23464 3' -57.4 NC_005259.1 + 2239 0.69 0.5025
Target:  5'- aUUUGUCGGCGacagccgguaCGGCGACGAgUUCGa -3'
miRNA:   3'- gGAGCAGCCGUg---------GCCGCUGCUaGAGU- -5'
23464 3' -57.4 NC_005259.1 + 6429 0.68 0.563418
Target:  5'- aCCUCGccgaugUCGGCACCGucGCGcUGAUCggCAg -3'
miRNA:   3'- -GGAGC------AGCCGUGGC--CGCuGCUAGa-GU- -5'
23464 3' -57.4 NC_005259.1 + 7804 0.68 0.563418
Target:  5'- uUCUCGUuuguaaugacCGGUAaugacCCGGCGGCGGUCa-- -3'
miRNA:   3'- -GGAGCA----------GCCGU-----GGCCGCUGCUAGagu -5'
23464 3' -57.4 NC_005259.1 + 8316 0.71 0.435352
Target:  5'- gCCUUGUCGGagcuGCCGaCGGCGAUCa-- -3'
miRNA:   3'- -GGAGCAGCCg---UGGCcGCUGCUAGagu -5'
23464 3' -57.4 NC_005259.1 + 8368 0.67 0.615616
Target:  5'- gCUCGgcggcggccUCGGCAUCGGCGA-GAgcCUCGg -3'
miRNA:   3'- gGAGC---------AGCCGUGGCCGCUgCUa-GAGU- -5'
23464 3' -57.4 NC_005259.1 + 10320 0.69 0.5025
Target:  5'- -gUCGUCaucgGGC-UCGGCGACGggCUCGg -3'
miRNA:   3'- ggAGCAG----CCGuGGCCGCUGCuaGAGU- -5'
23464 3' -57.4 NC_005259.1 + 12021 0.68 0.584195
Target:  5'- gCCUUGUaCGGUGCgGGCGGCaaccGGUaCUCAc -3'
miRNA:   3'- -GGAGCA-GCCGUGgCCGCUG----CUA-GAGU- -5'
23464 3' -57.4 NC_005259.1 + 13455 0.66 0.719863
Target:  5'- --cCGUCGGCG-CGGCGcUGGUgCUCAc -3'
miRNA:   3'- ggaGCAGCCGUgGCCGCuGCUA-GAGU- -5'
23464 3' -57.4 NC_005259.1 + 15645 0.68 0.553102
Target:  5'- gCC-CGUCcgauccuguGCGacgaCGGCGACGGUCUCAc -3'
miRNA:   3'- -GGaGCAGc--------CGUg---GCCGCUGCUAGAGU- -5'
23464 3' -57.4 NC_005259.1 + 17524 0.66 0.709635
Target:  5'- gCUCGUgGGCACaCaGCGACGG-CgggCAu -3'
miRNA:   3'- gGAGCAgCCGUG-GcCGCUGCUaGa--GU- -5'
23464 3' -57.4 NC_005259.1 + 19172 0.66 0.730011
Target:  5'- gUUCGUCGGCGCucaaCGGUGcccucgacaGCGAgCUCGu -3'
miRNA:   3'- gGAGCAGCCGUG----GCCGC---------UGCUaGAGU- -5'
23464 3' -57.4 NC_005259.1 + 20059 0.67 0.636642
Target:  5'- --aUGUCcGCugCGGUGGCGGUCgUCAc -3'
miRNA:   3'- ggaGCAGcCGugGCCGCUGCUAG-AGU- -5'
23464 3' -57.4 NC_005259.1 + 20486 0.69 0.522521
Target:  5'- aCCUCGacaccgccCGGCAgcucaUCGGCGACGGUgUCc -3'
miRNA:   3'- -GGAGCa-------GCCGU-----GGCCGCUGCUAgAGu -5'
23464 3' -57.4 NC_005259.1 + 21980 0.7 0.492615
Target:  5'- -gUCGUucuccccacCGGCACCGGCaagucGACGGUCaUCGg -3'
miRNA:   3'- ggAGCA---------GCCGUGGCCG-----CUGCUAG-AGU- -5'
23464 3' -57.4 NC_005259.1 + 22387 0.68 0.605119
Target:  5'- cCCg-GUCGGCcUCGGCGACGugaUCGa -3'
miRNA:   3'- -GGagCAGCCGuGGCCGCUGCuagAGU- -5'
23464 3' -57.4 NC_005259.1 + 27376 0.71 0.426184
Target:  5'- gCC-CGgcaCGGUgACCGGCGGCGGUgUCGg -3'
miRNA:   3'- -GGaGCa--GCCG-UGGCCGCUGCUAgAGU- -5'
23464 3' -57.4 NC_005259.1 + 31887 0.66 0.678576
Target:  5'- aCCUCGcCGGUcucaaggcCCGGCG-CGAgcgcCUCAa -3'
miRNA:   3'- -GGAGCaGCCGu-------GGCCGCuGCUa---GAGU- -5'
23464 3' -57.4 NC_005259.1 + 34050 0.71 0.408198
Target:  5'- uUCUUGUUGGCAUuguccgaccaCGGCGGCGGUgUCc -3'
miRNA:   3'- -GGAGCAGCCGUG----------GCCGCUGCUAgAGu -5'
23464 3' -57.4 NC_005259.1 + 34560 0.69 0.5025
Target:  5'- --cCGUCGGgGCCGaCGGCGAgguUCUCGg -3'
miRNA:   3'- ggaGCAGCCgUGGCcGCUGCU---AGAGU- -5'
23464 3' -57.4 NC_005259.1 + 34868 0.72 0.35719
Target:  5'- uCCUCGUCGGUGCCGGacCGGgGugcCUCGg -3'
miRNA:   3'- -GGAGCAGCCGUGGCC--GCUgCua-GAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.