miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23464 5' -56.6 NC_005259.1 + 47307 0.66 0.716673
Target:  5'- aGCGac-CCCUUGGCCU-GAccGGCGGc -3'
miRNA:   3'- gCGCauuGGGAGCCGGAaCU--CUGCCa -5'
23464 5' -56.6 NC_005259.1 + 27023 0.66 0.715633
Target:  5'- gCGcCGUAGCUgaacaccuugagCUUGGCCUUGGccugagcGACGGUc -3'
miRNA:   3'- -GC-GCAUUGG------------GAGCCGGAACU-------CUGCCA- -5'
23464 5' -56.6 NC_005259.1 + 62518 0.66 0.706241
Target:  5'- aGCGgucagcacuUCCUCGGCCUc--GACGGUc -3'
miRNA:   3'- gCGCauu------GGGAGCCGGAacuCUGCCA- -5'
23464 5' -56.6 NC_005259.1 + 15067 0.66 0.685185
Target:  5'- cCGUGgccACCCU-GGcCCUUGAGcCGGUc -3'
miRNA:   3'- -GCGCau-UGGGAgCC-GGAACUCuGCCA- -5'
23464 5' -56.6 NC_005259.1 + 59406 0.67 0.675641
Target:  5'- aGCGUGACCUcgcgcauggcgucggCGGCCaUGAagaacGGCGGUu -3'
miRNA:   3'- gCGCAUUGGGa--------------GCCGGaACU-----CUGCCA- -5'
23464 5' -56.6 NC_005259.1 + 24270 0.67 0.641504
Target:  5'- aCGCGUGGCUggaagcgCUCGaCCUcGGGAUGGUg -3'
miRNA:   3'- -GCGCAUUGG-------GAGCcGGAaCUCUGCCA- -5'
23464 5' -56.6 NC_005259.1 + 64799 0.7 0.475858
Target:  5'- gGCuGUGugCCUCGGCCUc--GGCGGc -3'
miRNA:   3'- gCG-CAUugGGAGCCGGAacuCUGCCa -5'
23464 5' -56.6 NC_005259.1 + 42634 0.7 0.466061
Target:  5'- gCGCGUAgGCaCCUCGGCCccgaUGuGGGCGGc -3'
miRNA:   3'- -GCGCAU-UG-GGAGCCGGa---AC-UCUGCCa -5'
23464 5' -56.6 NC_005259.1 + 59054 0.71 0.400634
Target:  5'- gCGCGUccucaggggucaGGCUCUcacCGGCCUUGuGGCGGg -3'
miRNA:   3'- -GCGCA------------UUGGGA---GCCGGAACuCUGCCa -5'
23464 5' -56.6 NC_005259.1 + 29932 0.73 0.333433
Target:  5'- aCGCGUGgccgccacgcgGCCCggucgCGGCUggUGGGGCGGg -3'
miRNA:   3'- -GCGCAU-----------UGGGa----GCCGGa-ACUCUGCCa -5'
23464 5' -56.6 NC_005259.1 + 8895 0.74 0.295815
Target:  5'- aGCGUcACgCUCGGCCUgcuGACGGg -3'
miRNA:   3'- gCGCAuUGgGAGCCGGAacuCUGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.