miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23466 3' -60 NC_005259.1 + 51425 0.66 0.573801
Target:  5'- -gGUUGAGGUCuuGGGCGGgccacggggcCUCG-CGCCg -3'
miRNA:   3'- cgCAGCUCCGG--CCCGUC----------GAGUaGCGG- -5'
23466 3' -60 NC_005259.1 + 52928 0.66 0.573801
Target:  5'- --cUCGAuGGCCuGGUcGCUCAaCGCCc -3'
miRNA:   3'- cgcAGCU-CCGGcCCGuCGAGUaGCGG- -5'
23466 3' -60 NC_005259.1 + 47610 0.66 0.563512
Target:  5'- uCGgCGAGGCUGaGGUucuugUCGUCGCCg -3'
miRNA:   3'- cGCaGCUCCGGC-CCGucg--AGUAGCGG- -5'
23466 3' -60 NC_005259.1 + 27994 0.66 0.563512
Target:  5'- gGUGgugCGGGuGCCgGGGCGGg--GUCGCCg -3'
miRNA:   3'- -CGCa--GCUC-CGG-CCCGUCgagUAGCGG- -5'
23466 3' -60 NC_005259.1 + 52021 0.66 0.563512
Target:  5'- aGCGUC-AGGCCGccgcacuGCGcGCU-GUCGCCg -3'
miRNA:   3'- -CGCAGcUCCGGCc------CGU-CGAgUAGCGG- -5'
23466 3' -60 NC_005259.1 + 47868 0.66 0.56146
Target:  5'- uUGUUGGccucuuccagcuuGGCCGGGUcagcgucGGCUCGUugagCGCCu -3'
miRNA:   3'- cGCAGCU-------------CCGGCCCG-------UCGAGUA----GCGG- -5'
23466 3' -60 NC_005259.1 + 32689 0.66 0.553273
Target:  5'- uCGUCGuaGCCGGGCGGUgguUCGUa -3'
miRNA:   3'- cGCAGCucCGGCCCGUCGaguAGCGg -5'
23466 3' -60 NC_005259.1 + 687 0.66 0.544106
Target:  5'- aGCGUCaAGGCCGaGGgGGUcugaacaugagguggCAUCGCg -3'
miRNA:   3'- -CGCAGcUCCGGC-CCgUCGa--------------GUAGCGg -5'
23466 3' -60 NC_005259.1 + 68334 0.66 0.542075
Target:  5'- aUGaUGGGGCUcagcggcucaucgGGGUAGCUCAUC-CCa -3'
miRNA:   3'- cGCaGCUCCGG-------------CCCGUCGAGUAGcGG- -5'
23466 3' -60 NC_005259.1 + 14091 0.66 0.541061
Target:  5'- uGCGcagCGAGGUCGaGGguGCggaaacgcaugcCAUCGCg -3'
miRNA:   3'- -CGCa--GCUCCGGC-CCguCGa-----------GUAGCGg -5'
23466 3' -60 NC_005259.1 + 28873 0.66 0.53297
Target:  5'- aCGUUG-GGCCGGGUAcguGUUCGUCaaGCa -3'
miRNA:   3'- cGCAGCuCCGGCCCGU---CGAGUAG--CGg -5'
23466 3' -60 NC_005259.1 + 6937 0.66 0.522917
Target:  5'- cGCcUUGAGGCCG---AGCUCGcCGCCg -3'
miRNA:   3'- -CGcAGCUCCGGCccgUCGAGUaGCGG- -5'
23466 3' -60 NC_005259.1 + 47070 0.67 0.512939
Target:  5'- aGCGaggCGAGcGCCgagacgauGGGCAGCaCGaucUCGCCc -3'
miRNA:   3'- -CGCa--GCUC-CGG--------CCCGUCGaGU---AGCGG- -5'
23466 3' -60 NC_005259.1 + 32522 0.67 0.512939
Target:  5'- -aGUCGAGG-CGGGCGGCagGcUUGaCCu -3'
miRNA:   3'- cgCAGCUCCgGCCCGUCGagU-AGC-GG- -5'
23466 3' -60 NC_005259.1 + 48191 0.67 0.50304
Target:  5'- gGUGUCG-GaCCGGGCAuGC-CGUCGUa -3'
miRNA:   3'- -CGCAGCuCcGGCCCGU-CGaGUAGCGg -5'
23466 3' -60 NC_005259.1 + 9489 0.67 0.493225
Target:  5'- cGCGcaUCGAGGCgaGGaacguGC-GCUCGUCGCg -3'
miRNA:   3'- -CGC--AGCUCCGg-CC-----CGuCGAGUAGCGg -5'
23466 3' -60 NC_005259.1 + 8752 0.67 0.493225
Target:  5'- cCGUCGAGGUCGaGGCccuuGGC-CAgCGCg -3'
miRNA:   3'- cGCAGCUCCGGC-CCG----UCGaGUaGCGg -5'
23466 3' -60 NC_005259.1 + 11779 0.67 0.473865
Target:  5'- aCGgCGAGGgagucccacacaUCGGGCgcgacccgcuugAGCUCGUCGCUg -3'
miRNA:   3'- cGCaGCUCC------------GGCCCG------------UCGAGUAGCGG- -5'
23466 3' -60 NC_005259.1 + 57080 0.67 0.470993
Target:  5'- cGCGUCGAGGauguCGGGuCGagcgccauccuugcGCUgAUCGUCc -3'
miRNA:   3'- -CGCAGCUCCg---GCCC-GU--------------CGAgUAGCGG- -5'
23466 3' -60 NC_005259.1 + 17080 0.67 0.464329
Target:  5'- uGCGUC-AGGCCgccgauauuGGGCugucgaucauGUUCAUCGCg -3'
miRNA:   3'- -CGCAGcUCCGG---------CCCGu---------CGAGUAGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.