miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23468 3' -60 NC_005259.1 + 19845 0.71 0.277347
Target:  5'- uGCUGCCGcGcUCGGUGUGGCGCUcGCg -3'
miRNA:   3'- gUGGCGGCuCaAGCCGUGCCGCGA-CG- -5'
23468 3' -60 NC_005259.1 + 27915 0.66 0.564406
Target:  5'- gACCGCgCGGGUgguagCGGUuCGGCGacccaGCu -3'
miRNA:   3'- gUGGCG-GCUCAa----GCCGuGCCGCga---CG- -5'
23468 3' -60 NC_005259.1 + 51662 0.7 0.30511
Target:  5'- uGCCGCgCGGGcgcgUCgGGCACGGgCGC-GCg -3'
miRNA:   3'- gUGGCG-GCUCa---AG-CCGUGCC-GCGaCG- -5'
23468 3' -60 NC_005259.1 + 7179 0.7 0.30511
Target:  5'- gCACCGgCGAGUgccCGGCcuGCGGacgcaccggGCUGCg -3'
miRNA:   3'- -GUGGCgGCUCAa--GCCG--UGCCg--------CGACG- -5'
23468 3' -60 NC_005259.1 + 54486 0.7 0.30439
Target:  5'- -cCCGCCGAGggucaUCGGCgggcaugGCGGCGaUGUg -3'
miRNA:   3'- guGGCGGCUCa----AGCCG-------UGCCGCgACG- -5'
23468 3' -60 NC_005259.1 + 35883 0.71 0.297975
Target:  5'- cCGCCGCCGAGgcagaccaCGGCGagccauucuGCGUUGCg -3'
miRNA:   3'- -GUGGCGGCUCaa------GCCGUgc-------CGCGACG- -5'
23468 3' -60 NC_005259.1 + 33898 0.71 0.297975
Target:  5'- cCACCcgcgcgacggGCCGAGacCGGcCACGGUGCgaGCa -3'
miRNA:   3'- -GUGG----------CGGCUCaaGCC-GUGCCGCGa-CG- -5'
23468 3' -60 NC_005259.1 + 2123 0.71 0.297268
Target:  5'- aCGCuCGCCGAGgucaCGcagacccGCACGGUGCUGg -3'
miRNA:   3'- -GUG-GCGGCUCaa--GC-------CGUGCCGCGACg -5'
23468 3' -60 NC_005259.1 + 1889 0.71 0.290969
Target:  5'- gGCCGCCGAGaUC-GCGCGa-GCUGCc -3'
miRNA:   3'- gUGGCGGCUCaAGcCGUGCcgCGACG- -5'
23468 3' -60 NC_005259.1 + 50007 0.71 0.284094
Target:  5'- gGCUGCCc---UCGuGCACgGGCGCUGCg -3'
miRNA:   3'- gUGGCGGcucaAGC-CGUG-CCGCGACG- -5'
23468 3' -60 NC_005259.1 + 2179 0.71 0.278016
Target:  5'- gGuuGCCGAGgucaugggccgcuaCGGCAaGGUGCUGCg -3'
miRNA:   3'- gUggCGGCUCaa------------GCCGUgCCGCGACG- -5'
23468 3' -60 NC_005259.1 + 17350 0.83 0.044541
Target:  5'- uCGCCGUCGAGgUCGGCGgcuCGGCGCUGg -3'
miRNA:   3'- -GUGGCGGCUCaAGCCGU---GCCGCGACg -5'
23468 3' -60 NC_005259.1 + 4505 0.71 0.264239
Target:  5'- cCACCgcGCCGGGagUGGCGCuGCGCgGCa -3'
miRNA:   3'- -GUGG--CGGCUCaaGCCGUGcCGCGaCG- -5'
23468 3' -60 NC_005259.1 + 66654 0.72 0.251638
Target:  5'- uGCUGCCGG--UCGGC--GGUGCUGCg -3'
miRNA:   3'- gUGGCGGCUcaAGCCGugCCGCGACG- -5'
23468 3' -60 NC_005259.1 + 3288 0.72 0.233669
Target:  5'- uCGCCGCCucgccGGUcccUCGGCGa-GCGCUGCg -3'
miRNA:   3'- -GUGGCGGc----UCA---AGCCGUgcCGCGACG- -5'
23468 3' -60 NC_005259.1 + 9823 0.73 0.200968
Target:  5'- gCACCGCCGGGU-----GCGGCGCUGg -3'
miRNA:   3'- -GUGGCGGCUCAagccgUGCCGCGACg -5'
23468 3' -60 NC_005259.1 + 34361 0.74 0.186159
Target:  5'- cCACCGCCGGuaUCGGCGCGuaaccucgacGCGCaacUGCu -3'
miRNA:   3'- -GUGGCGGCUcaAGCCGUGC----------CGCG---ACG- -5'
23468 3' -60 NC_005259.1 + 4976 0.75 0.14355
Target:  5'- -uCCGCCGAGUUCGGCcgAUGGCcggGCa -3'
miRNA:   3'- guGGCGGCUCAAGCCG--UGCCGcgaCG- -5'
23468 3' -60 NC_005259.1 + 24041 0.76 0.139818
Target:  5'- aACCGCCGcaacGUcgUCGGCGCGGUGCUc- -3'
miRNA:   3'- gUGGCGGCu---CA--AGCCGUGCCGCGAcg -5'
23468 3' -60 NC_005259.1 + 58748 0.77 0.119234
Target:  5'- gCACCGgCGaAGUUCGGCgaACGaCGCUGCg -3'
miRNA:   3'- -GUGGCgGC-UCAAGCCG--UGCcGCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.