Results 1 - 20 of 80 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23468 | 3' | -60 | NC_005259.1 | + | 17350 | 0.83 | 0.044541 |
Target: 5'- uCGCCGUCGAGgUCGGCGgcuCGGCGCUGg -3' miRNA: 3'- -GUGGCGGCUCaAGCCGU---GCCGCGACg -5' |
|||||||
23468 | 3' | -60 | NC_005259.1 | + | 13428 | 0.82 | 0.051035 |
Target: 5'- uCGCCGCCGGggccgcgcuaggcGUgaccgUCGGCGCGGCGCUGg -3' miRNA: 3'- -GUGGCGGCU-------------CA-----AGCCGUGCCGCGACg -5' |
|||||||
23468 | 3' | -60 | NC_005259.1 | + | 58748 | 0.77 | 0.119234 |
Target: 5'- gCACCGgCGaAGUUCGGCgaACGaCGCUGCg -3' miRNA: 3'- -GUGGCgGC-UCAAGCCG--UGCcGCGACG- -5' |
|||||||
23468 | 3' | -60 | NC_005259.1 | + | 24041 | 0.76 | 0.139818 |
Target: 5'- aACCGCCGcaacGUcgUCGGCGCGGUGCUc- -3' miRNA: 3'- gUGGCGGCu---CA--AGCCGUGCCGCGAcg -5' |
|||||||
23468 | 3' | -60 | NC_005259.1 | + | 4976 | 0.75 | 0.14355 |
Target: 5'- -uCCGCCGAGUUCGGCcgAUGGCcggGCa -3' miRNA: 3'- guGGCGGCUCAAGCCG--UGCCGcgaCG- -5' |
|||||||
23468 | 3' | -60 | NC_005259.1 | + | 34361 | 0.74 | 0.186159 |
Target: 5'- cCACCGCCGGuaUCGGCGCGuaaccucgacGCGCaacUGCu -3' miRNA: 3'- -GUGGCGGCUcaAGCCGUGC----------CGCG---ACG- -5' |
|||||||
23468 | 3' | -60 | NC_005259.1 | + | 9823 | 0.73 | 0.200968 |
Target: 5'- gCACCGCCGGGU-----GCGGCGCUGg -3' miRNA: 3'- -GUGGCGGCUCAagccgUGCCGCGACg -5' |
|||||||
23468 | 3' | -60 | NC_005259.1 | + | 3288 | 0.72 | 0.233669 |
Target: 5'- uCGCCGCCucgccGGUcccUCGGCGa-GCGCUGCg -3' miRNA: 3'- -GUGGCGGc----UCA---AGCCGUgcCGCGACG- -5' |
|||||||
23468 | 3' | -60 | NC_005259.1 | + | 66654 | 0.72 | 0.251638 |
Target: 5'- uGCUGCCGG--UCGGC--GGUGCUGCg -3' miRNA: 3'- gUGGCGGCUcaAGCCGugCCGCGACG- -5' |
|||||||
23468 | 3' | -60 | NC_005259.1 | + | 4505 | 0.71 | 0.264239 |
Target: 5'- cCACCgcGCCGGGagUGGCGCuGCGCgGCa -3' miRNA: 3'- -GUGG--CGGCUCaaGCCGUGcCGCGaCG- -5' |
|||||||
23468 | 3' | -60 | NC_005259.1 | + | 19845 | 0.71 | 0.277347 |
Target: 5'- uGCUGCCGcGcUCGGUGUGGCGCUcGCg -3' miRNA: 3'- gUGGCGGCuCaAGCCGUGCCGCGA-CG- -5' |
|||||||
23468 | 3' | -60 | NC_005259.1 | + | 2179 | 0.71 | 0.278016 |
Target: 5'- gGuuGCCGAGgucaugggccgcuaCGGCAaGGUGCUGCg -3' miRNA: 3'- gUggCGGCUCaa------------GCCGUgCCGCGACG- -5' |
|||||||
23468 | 3' | -60 | NC_005259.1 | + | 50007 | 0.71 | 0.284094 |
Target: 5'- gGCUGCCc---UCGuGCACgGGCGCUGCg -3' miRNA: 3'- gUGGCGGcucaAGC-CGUG-CCGCGACG- -5' |
|||||||
23468 | 3' | -60 | NC_005259.1 | + | 1889 | 0.71 | 0.290969 |
Target: 5'- gGCCGCCGAGaUC-GCGCGa-GCUGCc -3' miRNA: 3'- gUGGCGGCUCaAGcCGUGCcgCGACG- -5' |
|||||||
23468 | 3' | -60 | NC_005259.1 | + | 2123 | 0.71 | 0.297268 |
Target: 5'- aCGCuCGCCGAGgucaCGcagacccGCACGGUGCUGg -3' miRNA: 3'- -GUG-GCGGCUCaa--GC-------CGUGCCGCGACg -5' |
|||||||
23468 | 3' | -60 | NC_005259.1 | + | 33898 | 0.71 | 0.297975 |
Target: 5'- cCACCcgcgcgacggGCCGAGacCGGcCACGGUGCgaGCa -3' miRNA: 3'- -GUGG----------CGGCUCaaGCC-GUGCCGCGa-CG- -5' |
|||||||
23468 | 3' | -60 | NC_005259.1 | + | 35883 | 0.71 | 0.297975 |
Target: 5'- cCGCCGCCGAGgcagaccaCGGCGagccauucuGCGUUGCg -3' miRNA: 3'- -GUGGCGGCUCaa------GCCGUgc-------CGCGACG- -5' |
|||||||
23468 | 3' | -60 | NC_005259.1 | + | 54486 | 0.7 | 0.30439 |
Target: 5'- -cCCGCCGAGggucaUCGGCgggcaugGCGGCGaUGUg -3' miRNA: 3'- guGGCGGCUCa----AGCCG-------UGCCGCgACG- -5' |
|||||||
23468 | 3' | -60 | NC_005259.1 | + | 7179 | 0.7 | 0.30511 |
Target: 5'- gCACCGgCGAGUgccCGGCcuGCGGacgcaccggGCUGCg -3' miRNA: 3'- -GUGGCgGCUCAa--GCCG--UGCCg--------CGACG- -5' |
|||||||
23468 | 3' | -60 | NC_005259.1 | + | 51662 | 0.7 | 0.30511 |
Target: 5'- uGCCGCgCGGGcgcgUCgGGCACGGgCGC-GCg -3' miRNA: 3'- gUGGCG-GCUCa---AG-CCGUGCC-GCGaCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home