miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23468 3' -60 NC_005259.1 + 27915 0.66 0.564406
Target:  5'- gACCGCgCGGGUgguagCGGUuCGGCGacccaGCu -3'
miRNA:   3'- gUGGCG-GCUCAa----GCCGuGCCGCga---CG- -5'
23468 3' -60 NC_005259.1 + 20492 0.66 0.564406
Target:  5'- aCACCGCCcGGcagcucaUCGGCgACGGUGUcccgagcacgggUGCg -3'
miRNA:   3'- -GUGGCGGcUCa------AGCCG-UGCCGCG------------ACG- -5'
23468 3' -60 NC_005259.1 + 58546 0.66 0.558232
Target:  5'- -cCCGUCGAGguuacggcUCGGgcgguugggccggauCGCGGCGCgGCu -3'
miRNA:   3'- guGGCGGCUCa-------AGCC---------------GUGCCGCGaCG- -5'
23468 3' -60 NC_005259.1 + 60278 0.66 0.554127
Target:  5'- gCGCUGCCGGG--CGGCcaucgucguCGGUGCgGCc -3'
miRNA:   3'- -GUGGCGGCUCaaGCCGu--------GCCGCGaCG- -5'
23468 3' -60 NC_005259.1 + 8064 0.66 0.554127
Target:  5'- uCGCCGCCGAcaUCGagaucgugccGCGCuGGCGUgaccgUGCg -3'
miRNA:   3'- -GUGGCGGCUcaAGC----------CGUG-CCGCG-----ACG- -5'
23468 3' -60 NC_005259.1 + 60153 0.66 0.553102
Target:  5'- gGCCGCCGccucagCGGCcucacggGCGGCGaacgcCUGCu -3'
miRNA:   3'- gUGGCGGCucaa--GCCG-------UGCCGC-----GACG- -5'
23468 3' -60 NC_005259.1 + 35110 0.66 0.543904
Target:  5'- uGCCGCCcg--UUGGCcCGGCGgUGUc -3'
miRNA:   3'- gUGGCGGcucaAGCCGuGCCGCgACG- -5'
23468 3' -60 NC_005259.1 + 49030 0.66 0.543904
Target:  5'- cCACCccgGUCGAG-UCGGCACGGaCGaUGa -3'
miRNA:   3'- -GUGG---CGGCUCaAGCCGUGCC-GCgACg -5'
23468 3' -60 NC_005259.1 + 61064 0.66 0.543904
Target:  5'- cUugUGCCGGGcaUCGGCAUaGGCGUcGUc -3'
miRNA:   3'- -GugGCGGCUCa-AGCCGUG-CCGCGaCG- -5'
23468 3' -60 NC_005259.1 + 59610 0.66 0.543904
Target:  5'- -cCCGCCGAcaggacaGGCacccACGGCGuCUGCc -3'
miRNA:   3'- guGGCGGCUcaag---CCG----UGCCGC-GACG- -5'
23468 3' -60 NC_005259.1 + 11930 0.66 0.523652
Target:  5'- aCACCGCCGccuuuucccGUUCGcGCAgccCGGCGa-GCa -3'
miRNA:   3'- -GUGGCGGCu--------CAAGC-CGU---GCCGCgaCG- -5'
23468 3' -60 NC_005259.1 + 54006 0.66 0.517632
Target:  5'- --aCGCCGGGgUCcaccagcgacgcucgGGCGCGGUGCggucUGCg -3'
miRNA:   3'- gugGCGGCUCaAG---------------CCGUGCCGCG----ACG- -5'
23468 3' -60 NC_005259.1 + 29056 0.66 0.513633
Target:  5'- aGCCG-CGAGcgCGGUAuCGGCccgaucugcGCUGCc -3'
miRNA:   3'- gUGGCgGCUCaaGCCGU-GCCG---------CGACG- -5'
23468 3' -60 NC_005259.1 + 51743 0.66 0.513633
Target:  5'- cCACCGCCacgcucUCGGCA--GCGUUGCg -3'
miRNA:   3'- -GUGGCGGcuca--AGCCGUgcCGCGACG- -5'
23468 3' -60 NC_005259.1 + 50649 0.66 0.513633
Target:  5'- aCGCCGCCcucggggccauaGGGcaccagcgcgUCGGUGCcgacgaGGCGCUGCu -3'
miRNA:   3'- -GUGGCGG------------CUCa---------AGCCGUG------CCGCGACG- -5'
23468 3' -60 NC_005259.1 + 26436 0.66 0.513633
Target:  5'- gCACCGCCGAGcgggCGGgC-CGGUGg-GCc -3'
miRNA:   3'- -GUGGCGGCUCaa--GCC-GuGCCGCgaCG- -5'
23468 3' -60 NC_005259.1 + 29877 0.66 0.512636
Target:  5'- cCACCGCCcgaugucGAGgUCGGCAagcacaaggGGUgGCUGCc -3'
miRNA:   3'- -GUGGCGG-------CUCaAGCCGUg--------CCG-CGACG- -5'
23468 3' -60 NC_005259.1 + 16207 0.67 0.503695
Target:  5'- -cCCGCCuGAGUUCcugaucaggugGGCcgaacgcacccCGGUGCUGCg -3'
miRNA:   3'- guGGCGG-CUCAAG-----------CCGu----------GCCGCGACG- -5'
23468 3' -60 NC_005259.1 + 31217 0.67 0.502705
Target:  5'- uGCCGuuGAucaGUccgaugagaccauUgGGCGCGGCGgUGCc -3'
miRNA:   3'- gUGGCggCU---CA-------------AgCCGUGCCGCgACG- -5'
23468 3' -60 NC_005259.1 + 24349 0.67 0.502705
Target:  5'- cUACCGCCGGGUgcUC-GCACaccgaggucugguGGCGCUa- -3'
miRNA:   3'- -GUGGCGGCUCA--AGcCGUG-------------CCGCGAcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.