miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23468 3' -60 NC_005259.1 + 58787 0.67 0.501717
Target:  5'- gCGCCgGUCGAGgcggugauugccUCGGCGgGcucGCGCUGCu -3'
miRNA:   3'- -GUGG-CGGCUCa-----------AGCCGUgC---CGCGACG- -5'
23468 3' -60 NC_005259.1 + 27351 0.67 0.500729
Target:  5'- aAUCGCCGuacugaucgggcuuGGUgccCGGCACGGUGaccgGCg -3'
miRNA:   3'- gUGGCGGC--------------UCAa--GCCGUGCCGCga--CG- -5'
23468 3' -60 NC_005259.1 + 4653 0.67 0.499742
Target:  5'- gCACCGCgccuacgGGCACGGUGuCUGCa -3'
miRNA:   3'- -GUGGCGgcucaagCCGUGCCGC-GACG- -5'
23468 3' -60 NC_005259.1 + 36782 0.67 0.496787
Target:  5'- uGCCGCCGuccugaccgcucgcgUCGGCAuuguugacCGGCGCgGUg -3'
miRNA:   3'- gUGGCGGCuca------------AGCCGU--------GCCGCGaCG- -5'
23468 3' -60 NC_005259.1 + 41788 0.67 0.49384
Target:  5'- gCAUCGgCGAGcagUCGGCA-GGCGguUUGCa -3'
miRNA:   3'- -GUGGCgGCUCa--AGCCGUgCCGC--GACG- -5'
23468 3' -60 NC_005259.1 + 43969 0.67 0.49384
Target:  5'- cCGCCGCCugaccGAGggCGGUgccgAUGGaCGCUGa -3'
miRNA:   3'- -GUGGCGG-----CUCaaGCCG----UGCC-GCGACg -5'
23468 3' -60 NC_005259.1 + 45002 0.67 0.49384
Target:  5'- gCACCGCCGAccgcCGGgGCcGCGCcGCc -3'
miRNA:   3'- -GUGGCGGCUcaa-GCCgUGcCGCGaCG- -5'
23468 3' -60 NC_005259.1 + 25050 0.67 0.484075
Target:  5'- gGCCGguagcCCGuuUUCaGGCAagggUGGCGCUGCc -3'
miRNA:   3'- gUGGC-----GGCucAAG-CCGU----GCCGCGACG- -5'
23468 3' -60 NC_005259.1 + 5645 0.67 0.484075
Target:  5'- -cCCGgCGAGgaCGGCG-GGCGCUacacGCg -3'
miRNA:   3'- guGGCgGCUCaaGCCGUgCCGCGA----CG- -5'
23468 3' -60 NC_005259.1 + 52145 0.67 0.484075
Target:  5'- gCACCucGCCGAGgcaGGCAgcgccgaGGCGCUcauGCa -3'
miRNA:   3'- -GUGG--CGGCUCaagCCGUg------CCGCGA---CG- -5'
23468 3' -60 NC_005259.1 + 33583 0.67 0.474402
Target:  5'- gACCGCgucgCGGGccaccgaGGCGCGGUcgaGCUGCa -3'
miRNA:   3'- gUGGCG----GCUCaag----CCGUGCCG---CGACG- -5'
23468 3' -60 NC_005259.1 + 42649 0.67 0.474402
Target:  5'- gGCC-CCGAuGUgggCGGCcacGCGGCuGCUGUu -3'
miRNA:   3'- gUGGcGGCU-CAa--GCCG---UGCCG-CGACG- -5'
23468 3' -60 NC_005259.1 + 45401 0.67 0.464828
Target:  5'- uCGCCGCCGAGcgCGcugauggccGC-CGcCGCUGCc -3'
miRNA:   3'- -GUGGCGGCUCaaGC---------CGuGCcGCGACG- -5'
23468 3' -60 NC_005259.1 + 23367 0.67 0.464828
Target:  5'- gGCCGCCGAGgcaUGGaucgucaacaGCGGUaaacgGCUGCc -3'
miRNA:   3'- gUGGCGGCUCaa-GCCg---------UGCCG-----CGACG- -5'
23468 3' -60 NC_005259.1 + 24238 0.67 0.464828
Target:  5'- gGCCGaggcacgCGAGUUCGGCGa-GUGCgUGCa -3'
miRNA:   3'- gUGGCg------GCUCAAGCCGUgcCGCG-ACG- -5'
23468 3' -60 NC_005259.1 + 57440 0.67 0.455356
Target:  5'- uUACgCGgCGAGgUUGGUGCGaCGCUGCg -3'
miRNA:   3'- -GUG-GCgGCUCaAGCCGUGCcGCGACG- -5'
23468 3' -60 NC_005259.1 + 7026 0.67 0.455356
Target:  5'- -cCCGCCGAGcgcccCGGCGgGGUuuuucGUUGCg -3'
miRNA:   3'- guGGCGGCUCaa---GCCGUgCCG-----CGACG- -5'
23468 3' -60 NC_005259.1 + 37221 0.67 0.455356
Target:  5'- cCGCCGCCGGGgcgcUGGCccgugcCGGauugGCUGCc -3'
miRNA:   3'- -GUGGCGGCUCaa--GCCGu-----GCCg---CGACG- -5'
23468 3' -60 NC_005259.1 + 48525 0.68 0.445988
Target:  5'- gCACUGCCGAcUUCu---CGGCGCUGUc -3'
miRNA:   3'- -GUGGCGGCUcAAGccguGCCGCGACG- -5'
23468 3' -60 NC_005259.1 + 44571 0.68 0.44042
Target:  5'- gCGCCGaCCGGcaggcucaugauGUUCGGCAUGcccgcagcgcccuuaGCGUUGCc -3'
miRNA:   3'- -GUGGC-GGCU------------CAAGCCGUGC---------------CGCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.