miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23468 3' -60 NC_005259.1 + 19845 0.71 0.277347
Target:  5'- uGCUGCCGcGcUCGGUGUGGCGCUcGCg -3'
miRNA:   3'- gUGGCGGCuCaAGCCGUGCCGCGA-CG- -5'
23468 3' -60 NC_005259.1 + 20492 0.66 0.564406
Target:  5'- aCACCGCCcGGcagcucaUCGGCgACGGUGUcccgagcacgggUGCg -3'
miRNA:   3'- -GUGGCGGcUCa------AGCCG-UGCCGCG------------ACG- -5'
23468 3' -60 NC_005259.1 + 21176 0.7 0.342742
Target:  5'- gGCaGUCGGGUcaUCGGCGCGaGCaccaaGCUGCa -3'
miRNA:   3'- gUGgCGGCUCA--AGCCGUGC-CG-----CGACG- -5'
23468 3' -60 NC_005259.1 + 23367 0.67 0.464828
Target:  5'- gGCCGCCGAGgcaUGGaucgucaacaGCGGUaaacgGCUGCc -3'
miRNA:   3'- gUGGCGGCUCaa-GCCg---------UGCCG-----CGACG- -5'
23468 3' -60 NC_005259.1 + 24041 0.76 0.139818
Target:  5'- aACCGCCGcaacGUcgUCGGCGCGGUGCUc- -3'
miRNA:   3'- gUGGCGGCu---CA--AGCCGUGCCGCGAcg -5'
23468 3' -60 NC_005259.1 + 24238 0.67 0.464828
Target:  5'- gGCCGaggcacgCGAGUUCGGCGa-GUGCgUGCa -3'
miRNA:   3'- gUGGCg------GCUCAAGCCGUgcCGCG-ACG- -5'
23468 3' -60 NC_005259.1 + 24282 0.68 0.436729
Target:  5'- aAgCGCuCGAccUCGGgAUGGUGCUGCu -3'
miRNA:   3'- gUgGCG-GCUcaAGCCgUGCCGCGACG- -5'
23468 3' -60 NC_005259.1 + 24349 0.67 0.502705
Target:  5'- cUACCGCCGGGUgcUC-GCACaccgaggucugguGGCGCUa- -3'
miRNA:   3'- -GUGGCGGCUCA--AGcCGUG-------------CCGCGAcg -5'
23468 3' -60 NC_005259.1 + 25050 0.67 0.484075
Target:  5'- gGCCGguagcCCGuuUUCaGGCAagggUGGCGCUGCc -3'
miRNA:   3'- gUGGC-----GGCucAAG-CCGU----GCCGCGACG- -5'
23468 3' -60 NC_005259.1 + 26047 0.68 0.436729
Target:  5'- gCGCCGCCGGGUU-GGCcAUGcCGCcGCc -3'
miRNA:   3'- -GUGGCGGCUCAAgCCG-UGCcGCGaCG- -5'
23468 3' -60 NC_005259.1 + 26436 0.66 0.513633
Target:  5'- gCACCGCCGAGcgggCGGgC-CGGUGg-GCc -3'
miRNA:   3'- -GUGGCGGCUCaa--GCC-GuGCCGCgaCG- -5'
23468 3' -60 NC_005259.1 + 26800 0.69 0.366879
Target:  5'- gCGCCGCCGcccGGUUggcCGGUaccgGCGGUGgUGCc -3'
miRNA:   3'- -GUGGCGGC---UCAA---GCCG----UGCCGCgACG- -5'
23468 3' -60 NC_005259.1 + 27351 0.67 0.500729
Target:  5'- aAUCGCCGuacugaucgggcuuGGUgccCGGCACGGUGaccgGCg -3'
miRNA:   3'- gUGGCGGC--------------UCAa--GCCGUGCCGCga--CG- -5'
23468 3' -60 NC_005259.1 + 27530 0.68 0.418549
Target:  5'- aCGCCGUCGAGgccccaCGGCG-GGaUGUUGCg -3'
miRNA:   3'- -GUGGCGGCUCaa----GCCGUgCC-GCGACG- -5'
23468 3' -60 NC_005259.1 + 27915 0.66 0.564406
Target:  5'- gACCGCgCGGGUgguagCGGUuCGGCGacccaGCu -3'
miRNA:   3'- gUGGCG-GCUCAa----GCCGuGCCGCga---CG- -5'
23468 3' -60 NC_005259.1 + 28961 0.7 0.312375
Target:  5'- gCAUCGCCGAGgUCGGUgccgaggccGCGaGCGCccGCu -3'
miRNA:   3'- -GUGGCGGCUCaAGCCG---------UGC-CGCGa-CG- -5'
23468 3' -60 NC_005259.1 + 28998 0.68 0.409633
Target:  5'- cUACgGCCacGAGaUCGGCgaauGCGGUGuCUGCg -3'
miRNA:   3'- -GUGgCGG--CUCaAGCCG----UGCCGC-GACG- -5'
23468 3' -60 NC_005259.1 + 29056 0.66 0.513633
Target:  5'- aGCCG-CGAGcgCGGUAuCGGCccgaucugcGCUGCc -3'
miRNA:   3'- gUGGCgGCUCaaGCCGU-GCCG---------CGACG- -5'
23468 3' -60 NC_005259.1 + 29466 0.68 0.400836
Target:  5'- uGCCGCCcGGcUCGGCAUGGacCGCcGUg -3'
miRNA:   3'- gUGGCGGcUCaAGCCGUGCC--GCGaCG- -5'
23468 3' -60 NC_005259.1 + 29877 0.66 0.512636
Target:  5'- cCACCGCCcgaugucGAGgUCGGCAagcacaaggGGUgGCUGCc -3'
miRNA:   3'- -GUGGCGG-------CUCaAGCCGUg--------CCG-CGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.