miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23468 3' -60 NC_005259.1 + 49030 0.66 0.543904
Target:  5'- cCACCccgGUCGAG-UCGGCACGGaCGaUGa -3'
miRNA:   3'- -GUGG---CGGCUCaAGCCGUGCC-GCgACg -5'
23468 3' -60 NC_005259.1 + 48525 0.68 0.445988
Target:  5'- gCACUGCCGAcUUCu---CGGCGCUGUc -3'
miRNA:   3'- -GUGGCGGCUcAAGccguGCCGCGACG- -5'
23468 3' -60 NC_005259.1 + 48182 0.7 0.319771
Target:  5'- cCGCCGCCGGGUgUCGGaC-CGG-GCaUGCc -3'
miRNA:   3'- -GUGGCGGCUCA-AGCC-GuGCCgCG-ACG- -5'
23468 3' -60 NC_005259.1 + 45401 0.67 0.464828
Target:  5'- uCGCCGCCGAGcgCGcugauggccGC-CGcCGCUGCc -3'
miRNA:   3'- -GUGGCGGCUCaaGC---------CGuGCcGCGACG- -5'
23468 3' -60 NC_005259.1 + 45180 0.68 0.436729
Target:  5'- uGCgCGCCGAGgUCaGCGCGGUGaugacggGCg -3'
miRNA:   3'- gUG-GCGGCUCaAGcCGUGCCGCga-----CG- -5'
23468 3' -60 NC_005259.1 + 45002 0.67 0.49384
Target:  5'- gCACCGCCGAccgcCGGgGCcGCGCcGCc -3'
miRNA:   3'- -GUGGCGGCUcaa-GCCgUGcCGCGaCG- -5'
23468 3' -60 NC_005259.1 + 44571 0.68 0.44042
Target:  5'- gCGCCGaCCGGcaggcucaugauGUUCGGCAUGcccgcagcgcccuuaGCGUUGCc -3'
miRNA:   3'- -GUGGC-GGCU------------CAAGCCGUGC---------------CGCGACG- -5'
23468 3' -60 NC_005259.1 + 43969 0.67 0.49384
Target:  5'- cCGCCGCCugaccGAGggCGGUgccgAUGGaCGCUGa -3'
miRNA:   3'- -GUGGCGG-----CUCaaGCCG----UGCC-GCGACg -5'
23468 3' -60 NC_005259.1 + 42649 0.67 0.474402
Target:  5'- gGCC-CCGAuGUgggCGGCcacGCGGCuGCUGUu -3'
miRNA:   3'- gUGGcGGCU-CAa--GCCG---UGCCG-CGACG- -5'
23468 3' -60 NC_005259.1 + 41788 0.67 0.49384
Target:  5'- gCAUCGgCGAGcagUCGGCA-GGCGguUUGCa -3'
miRNA:   3'- -GUGGCgGCUCa--AGCCGUgCCGC--GACG- -5'
23468 3' -60 NC_005259.1 + 37221 0.67 0.455356
Target:  5'- cCGCCGCCGGGgcgcUGGCccgugcCGGauugGCUGCc -3'
miRNA:   3'- -GUGGCGGCUCaa--GCCGu-----GCCg---CGACG- -5'
23468 3' -60 NC_005259.1 + 36782 0.67 0.496787
Target:  5'- uGCCGCCGuccugaccgcucgcgUCGGCAuuguugacCGGCGCgGUg -3'
miRNA:   3'- gUGGCGGCuca------------AGCCGU--------GCCGCGaCG- -5'
23468 3' -60 NC_005259.1 + 36066 0.69 0.383608
Target:  5'- cCACCuGCUGuGUgcUCGuCGCGGUGCUGUu -3'
miRNA:   3'- -GUGG-CGGCuCA--AGCcGUGCCGCGACG- -5'
23468 3' -60 NC_005259.1 + 35883 0.71 0.297975
Target:  5'- cCGCCGCCGAGgcagaccaCGGCGagccauucuGCGUUGCg -3'
miRNA:   3'- -GUGGCGGCUCaa------GCCGUgc-------CGCGACG- -5'
23468 3' -60 NC_005259.1 + 35110 0.66 0.543904
Target:  5'- uGCCGCCcg--UUGGCcCGGCGgUGUc -3'
miRNA:   3'- gUGGCGGcucaAGCCGuGCCGCgACG- -5'
23468 3' -60 NC_005259.1 + 34361 0.74 0.186159
Target:  5'- cCACCGCCGGuaUCGGCGCGuaaccucgacGCGCaacUGCu -3'
miRNA:   3'- -GUGGCGGCUcaAGCCGUGC----------CGCG---ACG- -5'
23468 3' -60 NC_005259.1 + 33898 0.71 0.297975
Target:  5'- cCACCcgcgcgacggGCCGAGacCGGcCACGGUGCgaGCa -3'
miRNA:   3'- -GUGG----------CGGCUCaaGCC-GUGCCGCGa-CG- -5'
23468 3' -60 NC_005259.1 + 33583 0.67 0.474402
Target:  5'- gACCGCgucgCGGGccaccgaGGCGCGGUcgaGCUGCa -3'
miRNA:   3'- gUGGCG----GCUCaag----CCGUGCCG---CGACG- -5'
23468 3' -60 NC_005259.1 + 32365 0.7 0.312375
Target:  5'- gACCGCCGuGUagGGCG-GGCaCUGCc -3'
miRNA:   3'- gUGGCGGCuCAagCCGUgCCGcGACG- -5'
23468 3' -60 NC_005259.1 + 31217 0.67 0.502705
Target:  5'- uGCCGuuGAucaGUccgaugagaccauUgGGCGCGGCGgUGCc -3'
miRNA:   3'- gUGGCggCU---CA-------------AgCCGUGCCGCgACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.