miRNA display CGI


Results 1 - 20 of 28 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23471 5' -55.1 NC_005259.1 + 50082 0.66 0.81955
Target:  5'- cCUGCGGCAgc-UCGcCGAUGgUGcGCCCg -3'
miRNA:   3'- -GAUGCUGUaccAGU-GCUGCgAC-CGGG- -5'
23471 5' -55.1 NC_005259.1 + 5003 0.68 0.710881
Target:  5'- aCUACGGCAaggUGGUCGaGAuCGauccGGCCCc -3'
miRNA:   3'- -GAUGCUGU---ACCAGUgCU-GCga--CCGGG- -5'
23471 5' -55.1 NC_005259.1 + 51259 0.68 0.710881
Target:  5'- uUGCGGCucgcgGUGGUCACGguGCGC-GGCa- -3'
miRNA:   3'- gAUGCUG-----UACCAGUGC--UGCGaCCGgg -5'
23471 5' -55.1 NC_005259.1 + 50942 0.67 0.729654
Target:  5'- -aACGGCucguugcauccuUGGcUCGCGugGCUGuCCCa -3'
miRNA:   3'- gaUGCUGu-----------ACC-AGUGCugCGACcGGG- -5'
23471 5' -55.1 NC_005259.1 + 35672 0.67 0.731722
Target:  5'- -cGCgGugGUGGUgcacaGCGACGCcGuGCCCg -3'
miRNA:   3'- gaUG-CugUACCAg----UGCUGCGaC-CGGG- -5'
23471 5' -55.1 NC_005259.1 + 65168 0.67 0.731722
Target:  5'- -cAUGGCccgccgGGUCAaGGCGCUGGUCg -3'
miRNA:   3'- gaUGCUGua----CCAGUgCUGCGACCGGg -5'
23471 5' -55.1 NC_005259.1 + 21173 0.67 0.742005
Target:  5'- -gACGGCAgucgGGUCAuCGGCGC-GaGCaCCa -3'
miRNA:   3'- gaUGCUGUa---CCAGU-GCUGCGaC-CG-GG- -5'
23471 5' -55.1 NC_005259.1 + 49858 0.67 0.742005
Target:  5'- -gAgGAUcguUGGUCACGACGCguUGcGCCg -3'
miRNA:   3'- gaUgCUGu--ACCAGUGCUGCG--AC-CGGg -5'
23471 5' -55.1 NC_005259.1 + 13462 0.67 0.752182
Target:  5'- -cGCGGCGcUGGugcUCACcGCGCUG-CCCg -3'
miRNA:   3'- gaUGCUGU-ACC---AGUGcUGCGACcGGG- -5'
23471 5' -55.1 NC_005259.1 + 37196 0.68 0.704567
Target:  5'- gCUGCGGCccuUGccGcCACcgccgccgccgccggGGCGCUGGCCCg -3'
miRNA:   3'- -GAUGCUGu--AC--CaGUG---------------CUGCGACCGGG- -5'
23471 5' -55.1 NC_005259.1 + 58570 0.68 0.700344
Target:  5'- gUugGGCcgGaUCGCGGCGCggcugccgGGCCg -3'
miRNA:   3'- gAugCUGuaCcAGUGCUGCGa-------CCGGg -5'
23471 5' -55.1 NC_005259.1 + 14060 0.68 0.668393
Target:  5'- -gGCGACGagaccagCACGGCGgUGGCCUa -3'
miRNA:   3'- gaUGCUGUacca---GUGCUGCgACCGGG- -5'
23471 5' -55.1 NC_005259.1 + 9824 0.78 0.214081
Target:  5'- -cACcGCcgGGU-GCGGCGCUGGCCCa -3'
miRNA:   3'- gaUGcUGuaCCAgUGCUGCGACCGGG- -5'
23471 5' -55.1 NC_005259.1 + 42258 0.73 0.402895
Target:  5'- gCUGUGAgGUGGUCACGuCGa-GGCCCu -3'
miRNA:   3'- -GAUGCUgUACCAGUGCuGCgaCCGGG- -5'
23471 5' -55.1 NC_005259.1 + 56699 0.72 0.439943
Target:  5'- gCUGCGAgGUGGcCACGAUGgUGuCCCc -3'
miRNA:   3'- -GAUGCUgUACCaGUGCUGCgACcGGG- -5'
23471 5' -55.1 NC_005259.1 + 65797 0.72 0.439943
Target:  5'- cCU-CGACGcgcUGGUCGaaACGCUGGCCg -3'
miRNA:   3'- -GAuGCUGU---ACCAGUgcUGCGACCGGg -5'
23471 5' -55.1 NC_005259.1 + 38881 0.7 0.540152
Target:  5'- -aAUGGCgGUGuUgACGACGCUGGCCg -3'
miRNA:   3'- gaUGCUG-UACcAgUGCUGCGACCGGg -5'
23471 5' -55.1 NC_005259.1 + 57443 0.69 0.60387
Target:  5'- -cGCGGCGaGGUUgguGCGACGCUgcggcaGGCCg -3'
miRNA:   3'- gaUGCUGUaCCAG---UGCUGCGA------CCGGg -5'
23471 5' -55.1 NC_005259.1 + 29931 0.69 0.62538
Target:  5'- -gACG-CGUGGcCGCcACGC-GGCCCg -3'
miRNA:   3'- gaUGCuGUACCaGUGcUGCGaCCGGG- -5'
23471 5' -55.1 NC_005259.1 + 55889 0.68 0.657664
Target:  5'- --cCGACcucgggGGUCGCGccgggguCGCUGGCCa -3'
miRNA:   3'- gauGCUGua----CCAGUGCu------GCGACCGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.