Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23471 | 5' | -55.1 | NC_005259.1 | + | 57443 | 0.69 | 0.60387 |
Target: 5'- -cGCGGCGaGGUUgguGCGACGCUgcggcaGGCCg -3' miRNA: 3'- gaUGCUGUaCCAG---UGCUGCGA------CCGGg -5' |
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23471 | 5' | -55.1 | NC_005259.1 | + | 29931 | 0.69 | 0.62538 |
Target: 5'- -gACG-CGUGGcCGCcACGC-GGCCCg -3' miRNA: 3'- gaUGCuGUACCaGUGcUGCGaCCGGG- -5' |
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23471 | 5' | -55.1 | NC_005259.1 | + | 55889 | 0.68 | 0.657664 |
Target: 5'- --cCGACcucgggGGUCGCGccgggguCGCUGGCCa -3' miRNA: 3'- gauGCUGua----CCAGUGCu------GCGACCGGg -5' |
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23471 | 5' | -55.1 | NC_005259.1 | + | 14060 | 0.68 | 0.668393 |
Target: 5'- -gGCGACGagaccagCACGGCGgUGGCCUa -3' miRNA: 3'- gaUGCUGUacca---GUGCUGCgACCGGG- -5' |
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23471 | 5' | -55.1 | NC_005259.1 | + | 58570 | 0.68 | 0.700344 |
Target: 5'- gUugGGCcgGaUCGCGGCGCggcugccgGGCCg -3' miRNA: 3'- gAugCUGuaCcAGUGCUGCGa-------CCGGg -5' |
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23471 | 5' | -55.1 | NC_005259.1 | + | 37196 | 0.68 | 0.704567 |
Target: 5'- gCUGCGGCccuUGccGcCACcgccgccgccgccggGGCGCUGGCCCg -3' miRNA: 3'- -GAUGCUGu--AC--CaGUG---------------CUGCGACCGGG- -5' |
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23471 | 5' | -55.1 | NC_005259.1 | + | 5003 | 0.68 | 0.710881 |
Target: 5'- aCUACGGCAaggUGGUCGaGAuCGauccGGCCCc -3' miRNA: 3'- -GAUGCUGU---ACCAGUgCU-GCga--CCGGG- -5' |
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23471 | 5' | -55.1 | NC_005259.1 | + | 50082 | 0.66 | 0.81955 |
Target: 5'- cCUGCGGCAgc-UCGcCGAUGgUGcGCCCg -3' miRNA: 3'- -GAUGCUGUaccAGU-GCUGCgAC-CGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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