Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 23471 | 5' | -55.1 | NC_005259.1 | + | 39490 | 0.67 | 0.752182 |
|
Target: 5'- -cACGAgAuaucgagcuugaUGGcCGCGcCGCUGGCCa -3' miRNA: 3'- gaUGCUgU------------ACCaGUGCuGCGACCGGg -5' |
|||||||
| 23471 | 5' | -55.1 | NC_005259.1 | + | 9061 | 0.66 | 0.772173 |
|
Target: 5'- --cCGGCucgGUGGUCAUGGCcacaGCauaGGCCCg -3' miRNA: 3'- gauGCUG---UACCAGUGCUG----CGa--CCGGG- -5' |
|||||||
| 23471 | 5' | -55.1 | NC_005259.1 | + | 16793 | 0.66 | 0.791611 |
|
Target: 5'- --uCGACGcGGUCGCGuacaucGCGCUcggGGCCg -3' miRNA: 3'- gauGCUGUaCCAGUGC------UGCGA---CCGGg -5' |
|||||||
| 23471 | 5' | -55.1 | NC_005259.1 | + | 22180 | 0.66 | 0.801097 |
|
Target: 5'- -cGCGcccauCGUGGUUGCGAccuugcagaCGUUGGCCa -3' miRNA: 3'- gaUGCu----GUACCAGUGCU---------GCGACCGGg -5' |
|||||||
| 23471 | 5' | -55.1 | NC_005259.1 | + | 6649 | 0.66 | 0.81955 |
|
Target: 5'- -gACGACAcGGUCGaggguguccgUGACGCgcgagcuGCCCg -3' miRNA: 3'- gaUGCUGUaCCAGU----------GCUGCGac-----CGGG- -5' |
|||||||
| 23471 | 5' | -55.1 | NC_005259.1 | + | 32202 | 0.66 | 0.81955 |
|
Target: 5'- uCUGCGACuUGGccUCAgacacCGACGCcucGGCaCCg -3' miRNA: 3'- -GAUGCUGuACC--AGU-----GCUGCGa--CCG-GG- -5' |
|||||||
| 23471 | 5' | -55.1 | NC_005259.1 | + | 46563 | 0.66 | 0.81955 |
|
Target: 5'- -cGCGcCuAUGGUCGCGGCGUcGaccgcgccGCCCg -3' miRNA: 3'- gaUGCuG-UACCAGUGCUGCGaC--------CGGG- -5' |
|||||||
| 23471 | 5' | -55.1 | NC_005259.1 | + | 50082 | 0.66 | 0.81955 |
|
Target: 5'- cCUGCGGCAgc-UCGcCGAUGgUGcGCCCg -3' miRNA: 3'- -GAUGCUGUaccAGU-GCUGCgAC-CGGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home