Results 21 - 38 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23472 | 3' | -63.4 | NC_005259.1 | + | 36854 | 0.66 | 0.330348 |
Target: 5'- cGCC-GCCCGcuGCGcCGUUGCUGGCa-- -3' miRNA: 3'- -CGGuUGGGC--CGCcGCGACGACCGguu -5' |
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23472 | 3' | -63.4 | NC_005259.1 | + | 37758 | 0.66 | 0.345875 |
Target: 5'- aCCAGCgCGGUGGCccCUGCgGGCaCGAg -3' miRNA: 3'- cGGUUGgGCCGCCGc-GACGaCCG-GUU- -5' |
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23472 | 3' | -63.4 | NC_005259.1 | + | 38874 | 0.67 | 0.293807 |
Target: 5'- cGCCcGCaauGGCGGUGUUgacgacGCUGGCCGGa -3' miRNA: 3'- -CGGuUGgg-CCGCCGCGA------CGACCGGUU- -5' |
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23472 | 3' | -63.4 | NC_005259.1 | + | 40545 | 0.67 | 0.296611 |
Target: 5'- uGCCGugguagucgacgcgcGCCCGcGCGGUGUUGCUgucGGCg-- -3' miRNA: 3'- -CGGU---------------UGGGC-CGCCGCGACGA---CCGguu -5' |
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23472 | 3' | -63.4 | NC_005259.1 | + | 41626 | 0.67 | 0.293807 |
Target: 5'- gGCUGACCaUGGUGGCGgUGCcGGUCu- -3' miRNA: 3'- -CGGUUGG-GCCGCCGCgACGaCCGGuu -5' |
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23472 | 3' | -63.4 | NC_005259.1 | + | 42494 | 0.67 | 0.286888 |
Target: 5'- aGCCGugACCCGucCGGCGgUG-UGGCCAGc -3' miRNA: 3'- -CGGU--UGGGCc-GCCGCgACgACCGGUU- -5' |
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23472 | 3' | -63.4 | NC_005259.1 | + | 47943 | 0.69 | 0.198074 |
Target: 5'- aGCCGAUgaCGGCGGUGCcGaUGGCCGc -3' miRNA: 3'- -CGGUUGg-GCCGCCGCGaCgACCGGUu -5' |
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23472 | 3' | -63.4 | NC_005259.1 | + | 49422 | 0.67 | 0.266903 |
Target: 5'- uGCCAGCgagaaaCCGGCGaGCGCcGCcuUGGUCGg -3' miRNA: 3'- -CGGUUG------GGCCGC-CGCGaCG--ACCGGUu -5' |
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23472 | 3' | -63.4 | NC_005259.1 | + | 52372 | 0.66 | 0.353832 |
Target: 5'- cGCCGACUcaagCGGCuGCGCagccUGCcucgGGCCAu -3' miRNA: 3'- -CGGUUGG----GCCGcCGCG----ACGa---CCGGUu -5' |
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23472 | 3' | -63.4 | NC_005259.1 | + | 53615 | 0.66 | 0.345875 |
Target: 5'- gGUCAGCaggcgUCGaGCGGUGCcGUUGGCCGc -3' miRNA: 3'- -CGGUUG-----GGC-CGCCGCGaCGACCGGUu -5' |
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23472 | 3' | -63.4 | NC_005259.1 | + | 55888 | 0.71 | 0.145243 |
Target: 5'- cCCGACCuCGGgGGuCGCgccggggucGCUGGCCAGa -3' miRNA: 3'- cGGUUGG-GCCgCC-GCGa--------CGACCGGUU- -5' |
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23472 | 3' | -63.4 | NC_005259.1 | + | 58935 | 0.67 | 0.308033 |
Target: 5'- gGCgGGCgCGGUGGCaGCgucgGCcuUGGCCAGc -3' miRNA: 3'- -CGgUUGgGCCGCCG-CGa---CG--ACCGGUU- -5' |
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23472 | 3' | -63.4 | NC_005259.1 | + | 59506 | 0.73 | 0.117516 |
Target: 5'- uGUCAccGCCCGGCGaauUGCUGUUGGCCu- -3' miRNA: 3'- -CGGU--UGGGCCGCc--GCGACGACCGGuu -5' |
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23472 | 3' | -63.4 | NC_005259.1 | + | 60215 | 0.67 | 0.300855 |
Target: 5'- cGCCGAUCuCGuCGGCGCUgagcucGCUGGCa-- -3' miRNA: 3'- -CGGUUGG-GCcGCCGCGA------CGACCGguu -5' |
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23472 | 3' | -63.4 | NC_005259.1 | + | 60814 | 0.68 | 0.248058 |
Target: 5'- gGCCGGaaaUCGuCGGCGaUGCUGGCCAc -3' miRNA: 3'- -CGGUUg--GGCcGCCGCgACGACCGGUu -5' |
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23472 | 3' | -63.4 | NC_005259.1 | + | 63617 | 0.66 | 0.329585 |
Target: 5'- gGCCAccgacGCCUgauagaucaucguGGCGaGCuGCUcGCUGGCCGGg -3' miRNA: 3'- -CGGU-----UGGG-------------CCGC-CG-CGA-CGACCGGUU- -5' |
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23472 | 3' | -63.4 | NC_005259.1 | + | 64433 | 0.66 | 0.353832 |
Target: 5'- cGCCGACgagcugCCGG-GGCGCUGCccuuggGGCg-- -3' miRNA: 3'- -CGGUUG------GGCCgCCGCGACGa-----CCGguu -5' |
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23472 | 3' | -63.4 | NC_005259.1 | + | 67229 | 0.69 | 0.203162 |
Target: 5'- uGCCGACCaCGGCGGUGUagggguugaGCggGGCCu- -3' miRNA: 3'- -CGGUUGG-GCCGCCGCGa--------CGa-CCGGuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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