Results 41 - 60 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23475 | 5' | -59.3 | NC_005259.1 | + | 42463 | 0.67 | 0.509921 |
Target: 5'- -gUCGCCG-ACUacgGCGagGCC-CGGCCc -3' miRNA: 3'- ugAGCGGCuUGAg--CGCa-CGGaGCCGG- -5' |
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23475 | 5' | -59.3 | NC_005259.1 | + | 42623 | 0.66 | 0.581338 |
Target: 5'- ---aGcCCGAugUCGCGcguaggcaCCUCGGCCc -3' miRNA: 3'- ugagC-GGCUugAGCGCac------GGAGCCGG- -5' |
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23475 | 5' | -59.3 | NC_005259.1 | + | 45324 | 0.74 | 0.193783 |
Target: 5'- cGC-CGCCGAACU-GCGUggccugcgccGCCUgGGCCg -3' miRNA: 3'- -UGaGCGGCUUGAgCGCA----------CGGAgCCGG- -5' |
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23475 | 5' | -59.3 | NC_005259.1 | + | 45402 | 0.67 | 0.537102 |
Target: 5'- cGC-CGCCGAGCgCGCuGauggccgccgccgcUGCCUCguaGGCCg -3' miRNA: 3'- -UGaGCGGCUUGaGCG-C--------------ACGGAG---CCGG- -5' |
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23475 | 5' | -59.3 | NC_005259.1 | + | 45473 | 0.67 | 0.540154 |
Target: 5'- aACggGCCGAGCUucuggcCGCuGgugGCCUUGGUCg -3' miRNA: 3'- -UGagCGGCUUGA------GCG-Ca--CGGAGCCGG- -5' |
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23475 | 5' | -59.3 | NC_005259.1 | + | 46927 | 0.69 | 0.424091 |
Target: 5'- cGC-CGCCGAGCUUGCccGCCgcgCcGCCg -3' miRNA: 3'- -UGaGCGGCUUGAGCGcaCGGa--GcCGG- -5' |
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23475 | 5' | -59.3 | NC_005259.1 | + | 47208 | 0.66 | 0.591747 |
Target: 5'- aACUUGCCGAGCUucUGCuGUcCCUCGacGCUg -3' miRNA: 3'- -UGAGCGGCUUGA--GCG-CAcGGAGC--CGG- -5' |
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23475 | 5' | -59.3 | NC_005259.1 | + | 47297 | 0.7 | 0.355504 |
Target: 5'- -gUCGCCGGACa-GCGaccCCUUGGCCu -3' miRNA: 3'- ugAGCGGCUUGagCGCac-GGAGCCGG- -5' |
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23475 | 5' | -59.3 | NC_005259.1 | + | 50319 | 0.68 | 0.441509 |
Target: 5'- uACUCGgcaaCGAGCUCGuCGcggcccuUGuCCUCGGUCa -3' miRNA: 3'- -UGAGCg---GCUUGAGC-GC-------AC-GGAGCCGG- -5' |
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23475 | 5' | -59.3 | NC_005259.1 | + | 50401 | 0.8 | 0.076353 |
Target: 5'- gGCUCGCCGAGCgCGCcgGUGCCUugacCGGCUc -3' miRNA: 3'- -UGAGCGGCUUGaGCG--CACGGA----GCCGG- -5' |
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23475 | 5' | -59.3 | NC_005259.1 | + | 50945 | 0.66 | 0.559612 |
Target: 5'- gGCUCGuuGcauccuuGGCUCGCGUGgCUgucccacgCGGCg -3' miRNA: 3'- -UGAGCggC-------UUGAGCGCACgGA--------GCCGg -5' |
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23475 | 5' | -59.3 | NC_005259.1 | + | 51509 | 0.69 | 0.424091 |
Target: 5'- cGC-CGCCGAucuCgacgCGCGUGaCCUCgugcacggGGCCg -3' miRNA: 3'- -UGaGCGGCUu--Ga---GCGCAC-GGAG--------CCGG- -5' |
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23475 | 5' | -59.3 | NC_005259.1 | + | 52370 | 0.7 | 0.347498 |
Target: 5'- -aUCGCCGAcucaagcgGCUgCGCagccUGCCUCgGGCCa -3' miRNA: 3'- ugAGCGGCU--------UGA-GCGc---ACGGAG-CCGG- -5' |
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23475 | 5' | -59.3 | NC_005259.1 | + | 53518 | 0.69 | 0.415091 |
Target: 5'- uGCUCGUggccagcggcaCGGGCUCG-GUGCCcggugUCGGCUc -3' miRNA: 3'- -UGAGCG-----------GCUUGAGCgCACGG-----AGCCGG- -5' |
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23475 | 5' | -59.3 | NC_005259.1 | + | 53605 | 0.69 | 0.388807 |
Target: 5'- uGCUCGUCGGGgUCaGCaggcgucgagcgGUGCCgUUGGCCg -3' miRNA: 3'- -UGAGCGGCUUgAG-CG------------CACGG-AGCCGG- -5' |
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23475 | 5' | -59.3 | NC_005259.1 | + | 54680 | 0.67 | 0.509921 |
Target: 5'- uGCUCGgCGAGCgagacCGUGUcgaggcgggugGCCUCaGCCu -3' miRNA: 3'- -UGAGCgGCUUGa----GCGCA-----------CGGAGcCGG- -5' |
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23475 | 5' | -59.3 | NC_005259.1 | + | 55037 | 0.66 | 0.581338 |
Target: 5'- gGCU-GCCGAGg-UGCuUGCCUCGGUg -3' miRNA: 3'- -UGAgCGGCUUgaGCGcACGGAGCCGg -5' |
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23475 | 5' | -59.3 | NC_005259.1 | + | 55592 | 0.72 | 0.26159 |
Target: 5'- cGCUgGCCacgcGAuaccacguCUCGCGcGCCUUGGCCg -3' miRNA: 3'- -UGAgCGG----CUu-------GAGCGCaCGGAGCCGG- -5' |
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23475 | 5' | -59.3 | NC_005259.1 | + | 55869 | 0.69 | 0.380291 |
Target: 5'- aACUCGCCGAGCgccUCGCcccGaCCUCGGg- -3' miRNA: 3'- -UGAGCGGCUUG---AGCGca-C-GGAGCCgg -5' |
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23475 | 5' | -59.3 | NC_005259.1 | + | 56417 | 0.67 | 0.5 |
Target: 5'- gGCcCGCCGAGCUCaagcagagcaGCGagcGCCg-GGCCa -3' miRNA: 3'- -UGaGCGGCUUGAG----------CGCa--CGGagCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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