miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23475 5' -59.3 NC_005259.1 + 16710 0.73 0.231237
Target:  5'- gAC-CGCCGAGCaggUCGCGcucUGCCUC-GCCa -3'
miRNA:   3'- -UGaGCGGCUUG---AGCGC---ACGGAGcCGG- -5'
23475 5' -59.3 NC_005259.1 + 17670 0.66 0.601141
Target:  5'- --cCGCCGucGACUCGCcccgaggGUGCCuaugagguugUCGGUCg -3'
miRNA:   3'- ugaGCGGC--UUGAGCG-------CACGG----------AGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 21644 0.66 0.591747
Target:  5'- gUUCGCCGAGgcuCUCGCGgagaUGCCgaucCaGCCc -3'
miRNA:   3'- uGAGCGGCUU---GAGCGC----ACGGa---GcCGG- -5'
23475 5' -59.3 NC_005259.1 + 23326 0.66 0.57511
Target:  5'- -gUCGCCGAgccggauuacaucggGCUCGaggcUGCCUgcgaGGCCg -3'
miRNA:   3'- ugAGCGGCU---------------UGAGCgc--ACGGAg---CCGG- -5'
23475 5' -59.3 NC_005259.1 + 24147 0.69 0.406208
Target:  5'- uGCUCGCCGAGuugCGCGaUGUCUacGCCa -3'
miRNA:   3'- -UGAGCGGCUUga-GCGC-ACGGAgcCGG- -5'
23475 5' -59.3 NC_005259.1 + 26437 0.69 0.380291
Target:  5'- cAC-CGCCGAGCggGCGgGCCggugGGCCg -3'
miRNA:   3'- -UGaGCGGCUUGagCGCaCGGag--CCGG- -5'
23475 5' -59.3 NC_005259.1 + 26505 0.67 0.519925
Target:  5'- aGCUCGCCGcccGGCgagaagagCGCGgugaGCagCUUGGCCa -3'
miRNA:   3'- -UGAGCGGC---UUGa-------GCGCa---CG--GAGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 26629 0.66 0.570967
Target:  5'- ---aGCCGAuaucgauggcCUgGCGUGCgCUCGGCa -3'
miRNA:   3'- ugagCGGCUu---------GAgCGCACG-GAGCCGg -5'
23475 5' -59.3 NC_005259.1 + 27298 0.68 0.469812
Target:  5'- cACgCGCCGGACacggucagcaucgUUGCGcggguUGCCUCGGUa -3'
miRNA:   3'- -UGaGCGGCUUG-------------AGCGC-----ACGGAGCCGg -5'
23475 5' -59.3 NC_005259.1 + 28017 0.74 0.198789
Target:  5'- -gUCGCCGGGgUUGCGcGCgUUGGCCa -3'
miRNA:   3'- ugAGCGGCUUgAGCGCaCGgAGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 28960 0.74 0.193783
Target:  5'- cGCaUCGCCGAGgUCG-GUGCCgaGGCCg -3'
miRNA:   3'- -UG-AGCGGCUUgAGCgCACGGagCCGG- -5'
23475 5' -59.3 NC_005259.1 + 29409 0.74 0.211265
Target:  5'- cCUCGgCGAGCUCGUgcgcgcacacaggauGUaCCUCGGCCu -3'
miRNA:   3'- uGAGCgGCUUGAGCG---------------CAcGGAGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 30099 0.67 0.509921
Target:  5'- cCUCGUCGGAgcUGUGUGCaUCGGCa -3'
miRNA:   3'- uGAGCGGCUUgaGCGCACGgAGCCGg -5'
23475 5' -59.3 NC_005259.1 + 32176 0.7 0.371902
Target:  5'- --gCGCgUGAGCUCGCugcgcGCCUCGGUCu -3'
miRNA:   3'- ugaGCG-GCUUGAGCGca---CGGAGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 33048 0.83 0.050473
Target:  5'- aGCUUGCCGGggucGCUCGCGUGCUUCugguauccgcuGGCCa -3'
miRNA:   3'- -UGAGCGGCU----UGAGCGCACGGAG-----------CCGG- -5'
23475 5' -59.3 NC_005259.1 + 34877 0.69 0.397446
Target:  5'- --gUGCCGGAC-CgGgGUGCCUCGGgCa -3'
miRNA:   3'- ugaGCGGCUUGaG-CgCACGGAGCCgG- -5'
23475 5' -59.3 NC_005259.1 + 36136 0.66 0.591747
Target:  5'- gGC-CGCCGGGCUgucCGUcGCCaUGGCCa -3'
miRNA:   3'- -UGaGCGGCUUGAgc-GCA-CGGaGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 38654 0.69 0.397446
Target:  5'- aACUCGCCGAAaucgaccacCUCGCuguugGCCgccgggucgaggUUGGCCa -3'
miRNA:   3'- -UGAGCGGCUU---------GAGCGca---CGG------------AGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 40661 0.8 0.082879
Target:  5'- uGCUCGCCGAGCagCGCGagcGCCUUGGUg -3'
miRNA:   3'- -UGAGCGGCUUGa-GCGCa--CGGAGCCGg -5'
23475 5' -59.3 NC_005259.1 + 41658 0.68 0.48042
Target:  5'- cGCUCGgUGAGCgggaucugcacCGCGUGCg-UGGCCa -3'
miRNA:   3'- -UGAGCgGCUUGa----------GCGCACGgaGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.