miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23475 5' -59.3 NC_005259.1 + 1436 0.69 0.415091
Target:  5'- uGCUCggGCUGGcacuGCUCGCGUGCUUCGcacuGCa -3'
miRNA:   3'- -UGAG--CGGCU----UGAGCGCACGGAGC----CGg -5'
23475 5' -59.3 NC_005259.1 + 1828 0.69 0.380291
Target:  5'- --cCGCCGAccuGCUCGCcgcUGCCgccgaGGCCg -3'
miRNA:   3'- ugaGCGGCU---UGAGCGc--ACGGag---CCGG- -5'
23475 5' -59.3 NC_005259.1 + 2124 0.66 0.581338
Target:  5'- cGCUCGCCGAggucacgcagACcCGCacgGUGCU--GGCCa -3'
miRNA:   3'- -UGAGCGGCU----------UGaGCG---CACGGagCCGG- -5'
23475 5' -59.3 NC_005259.1 + 2634 0.66 0.602187
Target:  5'- cCUCGCCGAACaagggCG-GUGUCgCGGgCa -3'
miRNA:   3'- uGAGCGGCUUGa----GCgCACGGaGCCgG- -5'
23475 5' -59.3 NC_005259.1 + 3287 0.67 0.530004
Target:  5'- -gUCGCCGc-CUCGCcgGUcCCUCGGCg -3'
miRNA:   3'- ugAGCGGCuuGAGCG--CAcGGAGCCGg -5'
23475 5' -59.3 NC_005259.1 + 3324 0.7 0.339622
Target:  5'- gACgugagCGCCGGgcaGCUCuGCGUGC-UCGGCa -3'
miRNA:   3'- -UGa----GCGGCU---UGAG-CGCACGgAGCCGg -5'
23475 5' -59.3 NC_005259.1 + 3562 0.72 0.268037
Target:  5'- aGCUUGCCGAGCUCGCc-GCCUacaaGGaCa -3'
miRNA:   3'- -UGAGCGGCUUGAGCGcaCGGAg---CCgG- -5'
23475 5' -59.3 NC_005259.1 + 5216 0.71 0.301485
Target:  5'- cGCUCGCCGAgcaauaccccgacGCUgagaucgaUGUGUGgCUCGGCg -3'
miRNA:   3'- -UGAGCGGCU-------------UGA--------GCGCACgGAGCCGg -5'
23475 5' -59.3 NC_005259.1 + 5717 0.68 0.470771
Target:  5'- gGCcagCGCCGGACg-GCG-GCCauucucgCGGCCa -3'
miRNA:   3'- -UGa--GCGGCUUGagCGCaCGGa------GCCGG- -5'
23475 5' -59.3 NC_005259.1 + 6049 0.66 0.581338
Target:  5'- cAC-CGaCGAGCUCGUGUGCg-CGGUg -3'
miRNA:   3'- -UGaGCgGCUUGAGCGCACGgaGCCGg -5'
23475 5' -59.3 NC_005259.1 + 6430 0.67 0.490164
Target:  5'- cCUCGCCGAugUCGgcacCGUcgcGCUgaUCGGCa -3'
miRNA:   3'- uGAGCGGCUugAGC----GCA---CGG--AGCCGg -5'
23475 5' -59.3 NC_005259.1 + 6945 0.67 0.490164
Target:  5'- ---gGCCGAGCUCGCc-GCCgaCGGCa -3'
miRNA:   3'- ugagCGGCUUGAGCGcaCGGa-GCCGg -5'
23475 5' -59.3 NC_005259.1 + 7244 0.69 0.415091
Target:  5'- aGCcgCGCCGGugUCGaGUGCgccaagaaacugCUCGGCUa -3'
miRNA:   3'- -UGa-GCGGCUugAGCgCACG------------GAGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 8352 0.73 0.219952
Target:  5'- cGCUgcUGCCGGuaucGCUCgGCGgcgGCCUCGGCa -3'
miRNA:   3'- -UGA--GCGGCU----UGAG-CGCa--CGGAGCCGg -5'
23475 5' -59.3 NC_005259.1 + 10930 0.7 0.331108
Target:  5'- aGCUCGgCGAACUCG-GUGUCgaccucgucggugUCGGUCu -3'
miRNA:   3'- -UGAGCgGCUUGAGCgCACGG-------------AGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 11035 0.66 0.602187
Target:  5'- gUUCGCCGggUggucacCGCaugacGUGCCgaUCGGCUc -3'
miRNA:   3'- uGAGCGGCuuGa-----GCG-----CACGG--AGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 12987 0.68 0.451776
Target:  5'- cAC-CGUgGuGCUCGCGUucGCaCUCGGCUa -3'
miRNA:   3'- -UGaGCGgCuUGAGCGCA--CG-GAGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 13417 0.67 0.509921
Target:  5'- cCUgGCCGGGgUCGCc-GCCggGGCCg -3'
miRNA:   3'- uGAgCGGCUUgAGCGcaCGGagCCGG- -5'
23475 5' -59.3 NC_005259.1 + 14734 0.67 0.540154
Target:  5'- -gUCGCCGAGauguaCGCGcugGCCg-GGCCg -3'
miRNA:   3'- ugAGCGGCUUga---GCGCa--CGGagCCGG- -5'
23475 5' -59.3 NC_005259.1 + 15365 0.66 0.602187
Target:  5'- uCUCGCCGAuCUgGgCGagcUGCCgcaaccgUGGCCg -3'
miRNA:   3'- uGAGCGGCUuGAgC-GC---ACGGa------GCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.