miRNA display CGI


Results 1 - 20 of 78 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23475 5' -59.3 NC_005259.1 + 33048 0.83 0.050473
Target:  5'- aGCUUGCCGGggucGCUCGCGUGCUUCugguauccgcuGGCCa -3'
miRNA:   3'- -UGAGCGGCU----UGAGCGCACGGAG-----------CCGG- -5'
23475 5' -59.3 NC_005259.1 + 50401 0.8 0.076353
Target:  5'- gGCUCGCCGAGCgCGCcgGUGCCUugacCGGCUc -3'
miRNA:   3'- -UGAGCGGCUUGaGCG--CACGGA----GCCGG- -5'
23475 5' -59.3 NC_005259.1 + 40661 0.8 0.082879
Target:  5'- uGCUCGCCGAGCagCGCGagcGCCUUGGUg -3'
miRNA:   3'- -UGAGCGGCUUGa-GCGCa--CGGAGCCGg -5'
23475 5' -59.3 NC_005259.1 + 64785 0.78 0.114676
Target:  5'- gGCcCGCUGcGACUggcUGUGUGCCUCGGCCu -3'
miRNA:   3'- -UGaGCGGC-UUGA---GCGCACGGAGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 58862 0.77 0.117789
Target:  5'- gGCUCGCCGucgUCGuCGUcGCCUCGGCa -3'
miRNA:   3'- -UGAGCGGCuugAGC-GCA-CGGAGCCGg -5'
23475 5' -59.3 NC_005259.1 + 58809 0.75 0.184102
Target:  5'- cCUCGgCGGGCUCGCGcUGC-UCGGCa -3'
miRNA:   3'- uGAGCgGCUUGAGCGC-ACGgAGCCGg -5'
23475 5' -59.3 NC_005259.1 + 28960 0.74 0.193783
Target:  5'- cGCaUCGCCGAGgUCG-GUGCCgaGGCCg -3'
miRNA:   3'- -UG-AGCGGCUUgAGCgCACGGagCCGG- -5'
23475 5' -59.3 NC_005259.1 + 45324 0.74 0.193783
Target:  5'- cGC-CGCCGAACU-GCGUggccugcgccGCCUgGGCCg -3'
miRNA:   3'- -UGaGCGGCUUGAgCGCA----------CGGAgCCGG- -5'
23475 5' -59.3 NC_005259.1 + 28017 0.74 0.198789
Target:  5'- -gUCGCCGGGgUUGCGcGCgUUGGCCa -3'
miRNA:   3'- ugAGCGGCUUgAGCGCaCGgAGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 29409 0.74 0.211265
Target:  5'- cCUCGgCGAGCUCGUgcgcgcacacaggauGUaCCUCGGCCu -3'
miRNA:   3'- uGAGCgGCUUGAGCG---------------CAcGGAGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 8352 0.73 0.219952
Target:  5'- cGCUgcUGCCGGuaucGCUCgGCGgcgGCCUCGGCa -3'
miRNA:   3'- -UGA--GCGGCU----UGAG-CGCa--CGGAGCCGg -5'
23475 5' -59.3 NC_005259.1 + 16710 0.73 0.231237
Target:  5'- gAC-CGCCGAGCaggUCGCGcucUGCCUC-GCCa -3'
miRNA:   3'- -UGaGCGGCUUG---AGCGC---ACGGAGcCGG- -5'
23475 5' -59.3 NC_005259.1 + 64307 0.73 0.243006
Target:  5'- aGCUCGCCGAuGCUCuCGgaaaagucccaUGCCUCGGaCUg -3'
miRNA:   3'- -UGAGCGGCU-UGAGcGC-----------ACGGAGCC-GG- -5'
23475 5' -59.3 NC_005259.1 + 55592 0.72 0.26159
Target:  5'- cGCUgGCCacgcGAuaccacguCUCGCGcGCCUUGGCCg -3'
miRNA:   3'- -UGAgCGG----CUu-------GAGCGCaCGGAGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 3562 0.72 0.268037
Target:  5'- aGCUUGCCGAGCUCGCc-GCCUacaaGGaCa -3'
miRNA:   3'- -UGAGCGGCUUGAGCGcaCGGAg---CCgG- -5'
23475 5' -59.3 NC_005259.1 + 60235 0.72 0.274611
Target:  5'- aGCUCGCUGGcacGCUUGCGUGCgggugcaaggCU-GGCCa -3'
miRNA:   3'- -UGAGCGGCU---UGAGCGCACG----------GAgCCGG- -5'
23475 5' -59.3 NC_005259.1 + 58912 0.71 0.291611
Target:  5'- gGCUCGUCGGcggucuugucgucgGCgggCGCGguggcagcgucgGCCUUGGCCa -3'
miRNA:   3'- -UGAGCGGCU--------------UGa--GCGCa-----------CGGAGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 5216 0.71 0.301485
Target:  5'- cGCUCGCCGAgcaauaccccgacGCUgagaucgaUGUGUGgCUCGGCg -3'
miRNA:   3'- -UGAGCGGCU-------------UGA--------GCGCACgGAGCCGg -5'
23475 5' -59.3 NC_005259.1 + 10930 0.7 0.331108
Target:  5'- aGCUCGgCGAACUCG-GUGUCgaccucgucggugUCGGUCu -3'
miRNA:   3'- -UGAGCgGCUUGAGCgCACGG-------------AGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 3324 0.7 0.339622
Target:  5'- gACgugagCGCCGGgcaGCUCuGCGUGC-UCGGCa -3'
miRNA:   3'- -UGa----GCGGCU---UGAG-CGCACGgAGCCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.