miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23475 5' -59.3 NC_005259.1 + 52370 0.7 0.347498
Target:  5'- -aUCGCCGAcucaagcgGCUgCGCagccUGCCUCgGGCCa -3'
miRNA:   3'- ugAGCGGCU--------UGA-GCGc---ACGGAG-CCGG- -5'
23475 5' -59.3 NC_005259.1 + 47297 0.7 0.355504
Target:  5'- -gUCGCCGGACa-GCGaccCCUUGGCCu -3'
miRNA:   3'- ugAGCGGCUUGagCGCac-GGAGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 67354 0.7 0.358742
Target:  5'- cGCUCGCCGAcCUCGCGccgGaucuuggggaaauuaCgCUUGGCCu -3'
miRNA:   3'- -UGAGCGGCUuGAGCGCa--C---------------G-GAGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 32176 0.7 0.371902
Target:  5'- --gCGCgUGAGCUCGCugcgcGCCUCGGUCu -3'
miRNA:   3'- ugaGCG-GCUUGAGCGca---CGGAGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 26437 0.69 0.380291
Target:  5'- cAC-CGCCGAGCggGCGgGCCggugGGCCg -3'
miRNA:   3'- -UGaGCGGCUUGagCGCaCGGag--CCGG- -5'
23475 5' -59.3 NC_005259.1 + 55869 0.69 0.380291
Target:  5'- aACUCGCCGAGCgccUCGCcccGaCCUCGGg- -3'
miRNA:   3'- -UGAGCGGCUUG---AGCGca-C-GGAGCCgg -5'
23475 5' -59.3 NC_005259.1 + 1828 0.69 0.380291
Target:  5'- --cCGCCGAccuGCUCGCcgcUGCCgccgaGGCCg -3'
miRNA:   3'- ugaGCGGCU---UGAGCGc--ACGGag---CCGG- -5'
23475 5' -59.3 NC_005259.1 + 68741 0.69 0.38795
Target:  5'- cGCUUGCCGAGCUCgaccccgGCGaccucGCCaUCGGUg -3'
miRNA:   3'- -UGAGCGGCUUGAG-------CGCa----CGG-AGCCGg -5'
23475 5' -59.3 NC_005259.1 + 53605 0.69 0.388807
Target:  5'- uGCUCGUCGGGgUCaGCaggcgucgagcgGUGCCgUUGGCCg -3'
miRNA:   3'- -UGAGCGGCUUgAG-CG------------CACGG-AGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 38654 0.69 0.397446
Target:  5'- aACUCGCCGAAaucgaccacCUCGCuguugGCCgccgggucgaggUUGGCCa -3'
miRNA:   3'- -UGAGCGGCUU---------GAGCGca---CGG------------AGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 34877 0.69 0.397446
Target:  5'- --gUGCCGGAC-CgGgGUGCCUCGGgCa -3'
miRNA:   3'- ugaGCGGCUUGaG-CgCACGGAGCCgG- -5'
23475 5' -59.3 NC_005259.1 + 24147 0.69 0.406208
Target:  5'- uGCUCGCCGAGuugCGCGaUGUCUacGCCa -3'
miRNA:   3'- -UGAGCGGCUUga-GCGC-ACGGAgcCGG- -5'
23475 5' -59.3 NC_005259.1 + 56909 0.69 0.406208
Target:  5'- gGC-CGCCGcAGCagGCGUGCCcgcgUCGGUg -3'
miRNA:   3'- -UGaGCGGC-UUGagCGCACGG----AGCCGg -5'
23475 5' -59.3 NC_005259.1 + 53518 0.69 0.415091
Target:  5'- uGCUCGUggccagcggcaCGGGCUCG-GUGCCcggugUCGGCUc -3'
miRNA:   3'- -UGAGCG-----------GCUUGAGCgCACGG-----AGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 1436 0.69 0.415091
Target:  5'- uGCUCggGCUGGcacuGCUCGCGUGCUUCGcacuGCa -3'
miRNA:   3'- -UGAG--CGGCU----UGAGCGCACGGAGC----CGg -5'
23475 5' -59.3 NC_005259.1 + 7244 0.69 0.415091
Target:  5'- aGCcgCGCCGGugUCGaGUGCgccaagaaacugCUCGGCUa -3'
miRNA:   3'- -UGa-GCGGCUugAGCgCACG------------GAGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 46927 0.69 0.424091
Target:  5'- cGC-CGCCGAGCUUGCccGCCgcgCcGCCg -3'
miRNA:   3'- -UGaGCGGCUUGAGCGcaCGGa--GcCGG- -5'
23475 5' -59.3 NC_005259.1 + 51509 0.69 0.424091
Target:  5'- cGC-CGCCGAucuCgacgCGCGUGaCCUCgugcacggGGCCg -3'
miRNA:   3'- -UGaGCGGCUu--Ga---GCGCAC-GGAG--------CCGG- -5'
23475 5' -59.3 NC_005259.1 + 57528 0.69 0.424091
Target:  5'- cGCUUGCCGAcgGCgaugGCGU-CCUCGGUg -3'
miRNA:   3'- -UGAGCGGCU--UGag--CGCAcGGAGCCGg -5'
23475 5' -59.3 NC_005259.1 + 60134 0.68 0.433207
Target:  5'- cCUCGUCcug--CGCG-GCCUUGGCCg -3'
miRNA:   3'- uGAGCGGcuugaGCGCaCGGAGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.