miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23475 5' -59.3 NC_005259.1 + 3287 0.67 0.530004
Target:  5'- -gUCGCCGc-CUCGCcgGUcCCUCGGCg -3'
miRNA:   3'- ugAGCGGCuuGAGCG--CAcGGAGCCGg -5'
23475 5' -59.3 NC_005259.1 + 26505 0.67 0.519925
Target:  5'- aGCUCGCCGcccGGCgagaagagCGCGgugaGCagCUUGGCCa -3'
miRNA:   3'- -UGAGCGGC---UUGa-------GCGCa---CG--GAGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 62024 0.67 0.519925
Target:  5'- cGCUCGCgCuguGugUCGaCGUaGuCCUCGGCCc -3'
miRNA:   3'- -UGAGCG-Gc--UugAGC-GCA-C-GGAGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 54680 0.67 0.509921
Target:  5'- uGCUCGgCGAGCgagacCGUGUcgaggcgggugGCCUCaGCCu -3'
miRNA:   3'- -UGAGCgGCUUGa----GCGCA-----------CGGAGcCGG- -5'
23475 5' -59.3 NC_005259.1 + 30099 0.67 0.509921
Target:  5'- cCUCGUCGGAgcUGUGUGCaUCGGCa -3'
miRNA:   3'- uGAGCGGCUUgaGCGCACGgAGCCGg -5'
23475 5' -59.3 NC_005259.1 + 13417 0.67 0.509921
Target:  5'- cCUgGCCGGGgUCGCc-GCCggGGCCg -3'
miRNA:   3'- uGAgCGGCUUgAGCGcaCGGagCCGG- -5'
23475 5' -59.3 NC_005259.1 + 42463 0.67 0.509921
Target:  5'- -gUCGCCG-ACUacgGCGagGCC-CGGCCc -3'
miRNA:   3'- ugAGCGGCuUGAg--CGCa-CGGaGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 56417 0.67 0.5
Target:  5'- gGCcCGCCGAGCUCaagcagagcaGCGagcGCCg-GGCCa -3'
miRNA:   3'- -UGaGCGGCUUGAG----------CGCa--CGGagCCGG- -5'
23475 5' -59.3 NC_005259.1 + 6430 0.67 0.490164
Target:  5'- cCUCGCCGAugUCGgcacCGUcgcGCUgaUCGGCa -3'
miRNA:   3'- uGAGCGGCUugAGC----GCA---CGG--AGCCGg -5'
23475 5' -59.3 NC_005259.1 + 6945 0.67 0.490164
Target:  5'- ---gGCCGAGCUCGCc-GCCgaCGGCa -3'
miRNA:   3'- ugagCGGCUUGAGCGcaCGGa-GCCGg -5'
23475 5' -59.3 NC_005259.1 + 61729 0.67 0.490164
Target:  5'- cCUUGUCGAGCagGUGUGCgUcCGGCg -3'
miRNA:   3'- uGAGCGGCUUGagCGCACGgA-GCCGg -5'
23475 5' -59.3 NC_005259.1 + 41658 0.68 0.48042
Target:  5'- cGCUCGgUGAGCgggaucugcacCGCGUGCg-UGGCCa -3'
miRNA:   3'- -UGAGCgGCUUGa----------GCGCACGgaGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 5717 0.68 0.470771
Target:  5'- gGCcagCGCCGGACg-GCG-GCCauucucgCGGCCa -3'
miRNA:   3'- -UGa--GCGGCUUGagCGCaCGGa------GCCGG- -5'
23475 5' -59.3 NC_005259.1 + 27298 0.68 0.469812
Target:  5'- cACgCGCCGGACacggucagcaucgUUGCGcggguUGCCUCGGUa -3'
miRNA:   3'- -UGaGCGGCUUG-------------AGCGC-----ACGGAGCCGg -5'
23475 5' -59.3 NC_005259.1 + 12987 0.68 0.451776
Target:  5'- cAC-CGUgGuGCUCGCGUucGCaCUCGGCUa -3'
miRNA:   3'- -UGaGCGgCuUGAGCGCA--CG-GAGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 58205 0.68 0.442437
Target:  5'- gGCUUGCCGGugUCaGgGUcagugGCCUCGaGCUc -3'
miRNA:   3'- -UGAGCGGCUugAG-CgCA-----CGGAGC-CGG- -5'
23475 5' -59.3 NC_005259.1 + 57708 0.68 0.442437
Target:  5'- gGCUUGCCcGACUCGCGgGUCU--GCCa -3'
miRNA:   3'- -UGAGCGGcUUGAGCGCaCGGAgcCGG- -5'
23475 5' -59.3 NC_005259.1 + 50319 0.68 0.441509
Target:  5'- uACUCGgcaaCGAGCUCGuCGcggcccuUGuCCUCGGUCa -3'
miRNA:   3'- -UGAGCg---GCUUGAGC-GC-------AC-GGAGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 60134 0.68 0.433207
Target:  5'- cCUCGUCcug--CGCG-GCCUUGGCCg -3'
miRNA:   3'- uGAGCGGcuugaGCGCaCGGAGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 51509 0.69 0.424091
Target:  5'- cGC-CGCCGAucuCgacgCGCGUGaCCUCgugcacggGGCCg -3'
miRNA:   3'- -UGaGCGGCUu--Ga---GCGCAC-GGAG--------CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.