miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23475 5' -59.3 NC_005259.1 + 68741 0.69 0.38795
Target:  5'- cGCUUGCCGAGCUCgaccccgGCGaccucGCCaUCGGUg -3'
miRNA:   3'- -UGAGCGGCUUGAG-------CGCa----CGG-AGCCGg -5'
23475 5' -59.3 NC_005259.1 + 67354 0.7 0.358742
Target:  5'- cGCUCGCCGAcCUCGCGccgGaucuuggggaaauuaCgCUUGGCCu -3'
miRNA:   3'- -UGAGCGGCUuGAGCGCa--C---------------G-GAGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 65985 0.66 0.550368
Target:  5'- gGCgCGCCGAgcagccGCUCGaCGUGgugcgcacCCUCggGGCCg -3'
miRNA:   3'- -UGaGCGGCU------UGAGC-GCAC--------GGAG--CCGG- -5'
23475 5' -59.3 NC_005259.1 + 64785 0.78 0.114676
Target:  5'- gGCcCGCUGcGACUggcUGUGUGCCUCGGCCu -3'
miRNA:   3'- -UGaGCGGC-UUGA---GCGCACGGAGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 64307 0.73 0.243006
Target:  5'- aGCUCGCCGAuGCUCuCGgaaaagucccaUGCCUCGGaCUg -3'
miRNA:   3'- -UGAGCGGCU-UGAGcGC-----------ACGGAGCC-GG- -5'
23475 5' -59.3 NC_005259.1 + 62024 0.67 0.519925
Target:  5'- cGCUCGCgCuguGugUCGaCGUaGuCCUCGGCCc -3'
miRNA:   3'- -UGAGCG-Gc--UugAGC-GCA-C-GGAGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 61729 0.67 0.490164
Target:  5'- cCUUGUCGAGCagGUGUGCgUcCGGCg -3'
miRNA:   3'- uGAGCGGCUUGagCGCACGgA-GCCGg -5'
23475 5' -59.3 NC_005259.1 + 60550 0.66 0.570967
Target:  5'- cGCUCGUCGGcauGCcCG-GUGCCgacggucaggCGGCCc -3'
miRNA:   3'- -UGAGCGGCU---UGaGCgCACGGa---------GCCGG- -5'
23475 5' -59.3 NC_005259.1 + 60502 0.66 0.602187
Target:  5'- cACgCGCCGGugUUGuCGUagugcGCCaUGGCCg -3'
miRNA:   3'- -UGaGCGGCUugAGC-GCA-----CGGaGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 60235 0.72 0.274611
Target:  5'- aGCUCGCUGGcacGCUUGCGUGCgggugcaaggCU-GGCCa -3'
miRNA:   3'- -UGAGCGGCU---UGAGCGCACG----------GAgCCGG- -5'
23475 5' -59.3 NC_005259.1 + 60134 0.68 0.433207
Target:  5'- cCUCGUCcug--CGCG-GCCUUGGCCg -3'
miRNA:   3'- uGAGCGGcuugaGCGCaCGGAGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 58912 0.71 0.291611
Target:  5'- gGCUCGUCGGcggucuugucgucgGCgggCGCGguggcagcgucgGCCUUGGCCa -3'
miRNA:   3'- -UGAGCGGCU--------------UGa--GCGCa-----------CGGAGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 58862 0.77 0.117789
Target:  5'- gGCUCGCCGucgUCGuCGUcGCCUCGGCa -3'
miRNA:   3'- -UGAGCGGCuugAGC-GCA-CGGAGCCGg -5'
23475 5' -59.3 NC_005259.1 + 58809 0.75 0.184102
Target:  5'- cCUCGgCGGGCUCGCGcUGC-UCGGCa -3'
miRNA:   3'- uGAGCgGCUUGAGCGC-ACGgAGCCGg -5'
23475 5' -59.3 NC_005259.1 + 58205 0.68 0.442437
Target:  5'- gGCUUGCCGGugUCaGgGUcagugGCCUCGaGCUc -3'
miRNA:   3'- -UGAGCGGCUugAG-CgCA-----CGGAGC-CGG- -5'
23475 5' -59.3 NC_005259.1 + 57708 0.68 0.442437
Target:  5'- gGCUUGCCcGACUCGCGgGUCU--GCCa -3'
miRNA:   3'- -UGAGCGGcUUGAGCGCaCGGAgcCGG- -5'
23475 5' -59.3 NC_005259.1 + 57528 0.69 0.424091
Target:  5'- cGCUUGCCGAcgGCgaugGCGU-CCUCGGUg -3'
miRNA:   3'- -UGAGCGGCU--UGag--CGCAcGGAGCCGg -5'
23475 5' -59.3 NC_005259.1 + 56909 0.69 0.406208
Target:  5'- gGC-CGCCGcAGCagGCGUGCCcgcgUCGGUg -3'
miRNA:   3'- -UGaGCGGC-UUGagCGCACGG----AGCCGg -5'
23475 5' -59.3 NC_005259.1 + 56417 0.67 0.5
Target:  5'- gGCcCGCCGAGCUCaagcagagcaGCGagcGCCg-GGCCa -3'
miRNA:   3'- -UGaGCGGCUUGAG----------CGCa--CGGagCCGG- -5'
23475 5' -59.3 NC_005259.1 + 55869 0.69 0.380291
Target:  5'- aACUCGCCGAGCgccUCGCcccGaCCUCGGg- -3'
miRNA:   3'- -UGAGCGGCUUG---AGCGca-C-GGAGCCgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.