miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23476 3' -58.3 NC_005259.1 + 14339 0.66 0.637342
Target:  5'- cGCGUgCGGGCCgCCGAcGCCauCAACuCACg -3'
miRNA:   3'- -CGCG-GCCUGG-GGCUaUGG--GUUG-GUGg -5'
23476 3' -58.3 NC_005259.1 + 16545 0.66 0.637342
Target:  5'- uGCGCCcgagcGACCagaGAU-CCCGcCCACCg -3'
miRNA:   3'- -CGCGGc----CUGGgg-CUAuGGGUuGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 8973 0.66 0.637342
Target:  5'- cGUGCCgGGACgUaGGUGCCagcggcgacggCAGCCGCCu -3'
miRNA:   3'- -CGCGG-CCUGgGgCUAUGG-----------GUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 30802 0.66 0.637342
Target:  5'- cCGCCGGAacaCCUGAgucggguagUCCGGCgCGCCg -3'
miRNA:   3'- cGCGGCCUg--GGGCUau-------GGGUUG-GUGG- -5'
23476 3' -58.3 NC_005259.1 + 36956 0.66 0.637342
Target:  5'- gGUGCCcgcgaGACCgCCucgGCCCGcACCGCCg -3'
miRNA:   3'- -CGCGGc----CUGG-GGcuaUGGGU-UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 24340 0.66 0.637342
Target:  5'- cGCGCUGGccuACCgCCgGGUGCUC-GCaCACCg -3'
miRNA:   3'- -CGCGGCC---UGG-GG-CUAUGGGuUG-GUGG- -5'
23476 3' -58.3 NC_005259.1 + 23333 0.66 0.62687
Target:  5'- -aGCCGGAUuacaucgggCUCGAggcUGCCUgcgaGGCCGCCg -3'
miRNA:   3'- cgCGGCCUG---------GGGCU---AUGGG----UUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 12293 0.67 0.620588
Target:  5'- cCGCCGcGCCUCGAUGCgggCAaugucggugcgcaccGCCGCCa -3'
miRNA:   3'- cGCGGCcUGGGGCUAUGg--GU---------------UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 18707 0.67 0.616403
Target:  5'- gGCgGUCuGACCUCGAUcAUCgGGCCGCCc -3'
miRNA:   3'- -CG-CGGcCUGGGGCUA-UGGgUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 53273 0.67 0.616403
Target:  5'- uCGCCGGugCCgccaaGAUcgACCuCAGCC-CCu -3'
miRNA:   3'- cGCGGCCugGGg----CUA--UGG-GUUGGuGG- -5'
23476 3' -58.3 NC_005259.1 + 58168 0.67 0.616403
Target:  5'- gGCGCacgGGAUCUCGAcgcacguCUUGACCGCCg -3'
miRNA:   3'- -CGCGg--CCUGGGGCUau-----GGGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 13889 0.67 0.616403
Target:  5'- gGUGacCCGaGACCCCGAcaACCaaCAACCACa -3'
miRNA:   3'- -CGC--GGC-CUGGGGCUa-UGG--GUUGGUGg -5'
23476 3' -58.3 NC_005259.1 + 56311 0.67 0.605947
Target:  5'- -gGCCGGACCCucgucgccguCGAgcaAUCCGACUuCCu -3'
miRNA:   3'- cgCGGCCUGGG----------GCUa--UGGGUUGGuGG- -5'
23476 3' -58.3 NC_005259.1 + 50093 0.67 0.605947
Target:  5'- uCGCCGaugguGCgCCCGAgguUGCCCGuacgcacgggcACCGCCa -3'
miRNA:   3'- cGCGGCc----UG-GGGCU---AUGGGU-----------UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 30125 0.67 0.599683
Target:  5'- uUGCCGuccGGCUgCGAUACCUcgggcagcucgaccgGGCCGCCu -3'
miRNA:   3'- cGCGGC---CUGGgGCUAUGGG---------------UUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 45520 0.67 0.596555
Target:  5'- cGCGCCGGuguugGCCgCCGuggcugcgagcggguUGCUCGccggGCCACCc -3'
miRNA:   3'- -CGCGGCC-----UGG-GGCu--------------AUGGGU----UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 1840 0.67 0.595512
Target:  5'- uCGCCGcuGCCgCCGAgGCCgagaaAGCCGCCg -3'
miRNA:   3'- cGCGGCc-UGG-GGCUaUGGg----UUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 40679 0.67 0.589265
Target:  5'- aGCGCCuuGGugCUCaccgGCCCGaugaucggggugcccGCCACCa -3'
miRNA:   3'- -CGCGG--CCugGGGcua-UGGGU---------------UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 17034 0.67 0.589265
Target:  5'- gGCGCUGGcaucgacaaccgcgACCCCGAggcggUGCgCGcauuugugcgucagGCCGCCg -3'
miRNA:   3'- -CGCGGCC--------------UGGGGCU-----AUGgGU--------------UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 46884 0.67 0.585106
Target:  5'- cGCGCCGccGCCCgCGAUGagCGcCCGCCg -3'
miRNA:   3'- -CGCGGCc-UGGG-GCUAUggGUuGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.