miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23476 3' -58.3 NC_005259.1 + 9631 0.71 0.392161
Target:  5'- cGCGCCGGugCCC-----UCGAUCACCu -3'
miRNA:   3'- -CGCGGCCugGGGcuaugGGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 9947 0.72 0.334183
Target:  5'- uGCGCC--ACCaaucgagCCGAccGCCCGACCACCg -3'
miRNA:   3'- -CGCGGccUGG-------GGCUa-UGGGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 10063 0.69 0.481163
Target:  5'- aCGCCGGuuuGCCCucgcaggacgccgaCGAguagACCCcgaGGCCACCg -3'
miRNA:   3'- cGCGGCC---UGGG--------------GCUa---UGGG---UUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 10817 0.7 0.418549
Target:  5'- uGCGCaCGGugC-CGAUggacacGCCC-ACCGCCu -3'
miRNA:   3'- -CGCG-GCCugGgGCUA------UGGGuUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 11011 0.67 0.564406
Target:  5'- cGCGCCGGACgCgCCGAgGCagGAguUCGCCg -3'
miRNA:   3'- -CGCGGCCUG-G-GGCUaUGggUU--GGUGG- -5'
23476 3' -58.3 NC_005259.1 + 11841 0.67 0.585106
Target:  5'- cCGCCGcACUCCGAccugccACCCGucggcgaacgugACCGCCg -3'
miRNA:   3'- cGCGGCcUGGGGCUa-----UGGGU------------UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 12188 0.7 0.400836
Target:  5'- cUGCCGGACCgUggucguguagaGAUGCaCCGGCgCACCg -3'
miRNA:   3'- cGCGGCCUGGgG-----------CUAUG-GGUUG-GUGG- -5'
23476 3' -58.3 NC_005259.1 + 12293 0.67 0.620588
Target:  5'- cCGCCGcGCCUCGAUGCgggCAaugucggugcgcaccGCCGCCa -3'
miRNA:   3'- cGCGGCcUGGGGCUAUGg--GU---------------UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 12938 0.74 0.239536
Target:  5'- --aCCGGACCCCGGcUGCgCGACC-CCg -3'
miRNA:   3'- cgcGGCCUGGGGCU-AUGgGUUGGuGG- -5'
23476 3' -58.3 NC_005259.1 + 13096 0.68 0.543904
Target:  5'- gGUGCCaccGACCCCGGcccGCUCGGCgGCUa -3'
miRNA:   3'- -CGCGGc--CUGGGGCUa--UGGGUUGgUGG- -5'
23476 3' -58.3 NC_005259.1 + 13220 0.76 0.186159
Target:  5'- aGCGgUGGGCCUCGA---CCGGCCACCg -3'
miRNA:   3'- -CGCgGCCUGGGGCUaugGGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 13465 0.66 0.658264
Target:  5'- gGCGCUGGugcucACCgCGcUGCCCGACgAUg -3'
miRNA:   3'- -CGCGGCC-----UGGgGCuAUGGGUUGgUGg -5'
23476 3' -58.3 NC_005259.1 + 13563 0.69 0.49384
Target:  5'- cCGCCGaccccGCCCCGAcACCCGaggACgACCc -3'
miRNA:   3'- cGCGGCc----UGGGGCUaUGGGU---UGgUGG- -5'
23476 3' -58.3 NC_005259.1 + 13889 0.67 0.616403
Target:  5'- gGUGacCCGaGACCCCGAcaACCaaCAACCACa -3'
miRNA:   3'- -CGC--GGC-CUGGGGCUa-UGG--GUUGGUGg -5'
23476 3' -58.3 NC_005259.1 + 13952 0.69 0.474402
Target:  5'- aCGCCGGACcauCCCGGcauCCCGAggcCCGCg -3'
miRNA:   3'- cGCGGCCUG---GGGCUau-GGGUU---GGUGg -5'
23476 3' -58.3 NC_005259.1 + 14264 0.75 0.195921
Target:  5'- cGUGUCGucACCCCGucgacaccgccUGCCCAACCACCg -3'
miRNA:   3'- -CGCGGCc-UGGGGCu----------AUGGGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 14339 0.66 0.637342
Target:  5'- cGCGUgCGGGCCgCCGAcGCCauCAACuCACg -3'
miRNA:   3'- -CGCG-GCCUGG-GGCUaUGG--GUUG-GUGg -5'
23476 3' -58.3 NC_005259.1 + 15097 0.68 0.523652
Target:  5'- uGCGCCgcaGGGCCaUCGAguggACCUugGACCAUCc -3'
miRNA:   3'- -CGCGG---CCUGG-GGCUa---UGGG--UUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 16229 0.66 0.64781
Target:  5'- uGgGCCGaacgcACCCCGGUGCU--GCgCACCg -3'
miRNA:   3'- -CgCGGCc----UGGGGCUAUGGguUG-GUGG- -5'
23476 3' -58.3 NC_005259.1 + 16454 0.66 0.679098
Target:  5'- cCGUCGG-CaUCGGUACCCcGCCGCa -3'
miRNA:   3'- cGCGGCCuGgGGCUAUGGGuUGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.