miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23476 3' -58.3 NC_005259.1 + 743 0.69 0.474402
Target:  5'- gGUGCCuacGCCgCCGGUGCCUAccgcguCCACCg -3'
miRNA:   3'- -CGCGGcc-UGG-GGCUAUGGGUu-----GGUGG- -5'
23476 3' -58.3 NC_005259.1 + 1840 0.67 0.595512
Target:  5'- uCGCCGcuGCCgCCGAgGCCgagaaAGCCGCCg -3'
miRNA:   3'- cGCGGCc-UGG-GGCUaUGGg----UUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 2165 0.7 0.436729
Target:  5'- gGCGUCGaGCCgCCGGUugCCGaggucauggGCCGCUa -3'
miRNA:   3'- -CGCGGCcUGG-GGCUAugGGU---------UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 3862 0.68 0.554127
Target:  5'- aCGCCGGucgagcGCCUCGA-GCCC-ACC-CCg -3'
miRNA:   3'- cGCGGCC------UGGGGCUaUGGGuUGGuGG- -5'
23476 3' -58.3 NC_005259.1 + 4358 0.76 0.176828
Target:  5'- aGCGCCGGACggcacgCCCG-UGCCCugcucAUCGCCa -3'
miRNA:   3'- -CGCGGCCUG------GGGCuAUGGGu----UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 5372 0.75 0.195921
Target:  5'- cGCGCCGGGCaa--GUGCCCAcacaucACCACCg -3'
miRNA:   3'- -CGCGGCCUGgggcUAUGGGU------UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 5415 0.69 0.474402
Target:  5'- cGCGCUGGccGCCacguCGAggucugcGCCCGcuGCCGCCg -3'
miRNA:   3'- -CGCGGCC--UGGg---GCUa------UGGGU--UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 5956 0.69 0.474402
Target:  5'- -aGCgGGACuUCUGcgGgCCGACCACCa -3'
miRNA:   3'- cgCGgCCUG-GGGCuaUgGGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 6099 0.72 0.30511
Target:  5'- aCGCCGaGAUCgCCGAgGCCgaGGCCGCCg -3'
miRNA:   3'- cGCGGC-CUGG-GGCUaUGGg-UUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 6225 0.69 0.49188
Target:  5'- cGCGCCGacaccguGACCgugggcgagugggUCGAUAuCCCGcACCGCCg -3'
miRNA:   3'- -CGCGGC-------CUGG-------------GGCUAU-GGGU-UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 6406 0.71 0.350659
Target:  5'- -aGgCGGuGCCCUGAUgugGCCCGACCucGCCg -3'
miRNA:   3'- cgCgGCC-UGGGGCUA---UGGGUUGG--UGG- -5'
23476 3' -58.3 NC_005259.1 + 6468 0.75 0.216792
Target:  5'- uCGCCGGugCCCuGUACCCGcUCACg -3'
miRNA:   3'- cGCGGCCugGGGcUAUGGGUuGGUGg -5'
23476 3' -58.3 NC_005259.1 + 7247 0.72 0.342742
Target:  5'- cGCGCCGGugucgagugcGCCaaGAaacUGCUCGGCUACCg -3'
miRNA:   3'- -CGCGGCC----------UGGggCU---AUGGGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 7285 0.67 0.578878
Target:  5'- nCGCCccGCCCCcaagcacuacaauugGGUGCCCGaguucACCGCCg -3'
miRNA:   3'- cGCGGccUGGGG---------------CUAUGGGU-----UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 7626 0.72 0.342742
Target:  5'- aGgGCCGGACCuacaccgucgCCGAgu-UCGACCGCCg -3'
miRNA:   3'- -CgCGGCCUGG----------GGCUaugGGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 7671 0.69 0.49384
Target:  5'- aGCGCCccGCCUCGuggggugGCCCGuacgucugcACCACCa -3'
miRNA:   3'- -CGCGGccUGGGGCua-----UGGGU---------UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 7861 0.77 0.163612
Target:  5'- cGCGCC-GACCCCGGUgGCCCGAgUGCUu -3'
miRNA:   3'- -CGCGGcCUGGGGCUA-UGGGUUgGUGG- -5'
23476 3' -58.3 NC_005259.1 + 8819 0.78 0.14355
Target:  5'- cGCGCCGGGCCggUGAguugacgcgcUGCgCCGACCACCa -3'
miRNA:   3'- -CGCGGCCUGGg-GCU----------AUG-GGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 8973 0.66 0.637342
Target:  5'- cGUGCCgGGACgUaGGUGCCagcggcgacggCAGCCGCCu -3'
miRNA:   3'- -CGCGG-CCUGgGgCUAUGG-----------GUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 9534 0.71 0.366879
Target:  5'- cCGCCGGGUCaCCGGagagcUGCCCGGCCucgACCg -3'
miRNA:   3'- cGCGGCCUGG-GGCU-----AUGGGUUGG---UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.