miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23476 3' -58.3 NC_005259.1 + 63532 0.75 0.206128
Target:  5'- uGUGCUGGACCUuuucgaGGUGCUCGgcgGCCACCg -3'
miRNA:   3'- -CGCGGCCUGGGg-----CUAUGGGU---UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 16454 0.66 0.679098
Target:  5'- cCGUCGG-CaUCGGUACCCcGCCGCa -3'
miRNA:   3'- cGCGGCCuGgGGCUAUGGGuUGGUGg -5'
23476 3' -58.3 NC_005259.1 + 43260 0.74 0.241917
Target:  5'- cGCGCCgGGugCCUGAgaguugaccgcagcGCCCG-CCGCCg -3'
miRNA:   3'- -CGCGG-CCugGGGCUa-------------UGGGUuGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 26615 0.74 0.239536
Target:  5'- cGCGCCGGACCgguagCCGAUAU-CGAUgGCCu -3'
miRNA:   3'- -CGCGGCCUGG-----GGCUAUGgGUUGgUGG- -5'
23476 3' -58.3 NC_005259.1 + 12938 0.74 0.239536
Target:  5'- --aCCGGACCCCGGcUGCgCGACC-CCg -3'
miRNA:   3'- cgcGGCCUGGGGCU-AUGgGUUGGuGG- -5'
23476 3' -58.3 NC_005259.1 + 38022 0.74 0.239536
Target:  5'- uUGUCaGGCCCgCGuugguGUACCCGGCCACCa -3'
miRNA:   3'- cGCGGcCUGGG-GC-----UAUGGGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 52297 0.74 0.233669
Target:  5'- cGCGCCuaucucuACCUCGGUACCCAcAUCACCu -3'
miRNA:   3'- -CGCGGcc-----UGGGGCUAUGGGU-UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 26778 0.75 0.216792
Target:  5'- cCGCCGGugCCuCGGaACaCCAgcGCCGCCg -3'
miRNA:   3'- cGCGGCCugGG-GCUaUG-GGU--UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 6468 0.75 0.216792
Target:  5'- uCGCCGGugCCCuGUACCCGcUCACg -3'
miRNA:   3'- cGCGGCCugGGGcUAUGGGUuGGUGg -5'
23476 3' -58.3 NC_005259.1 + 63177 0.75 0.211402
Target:  5'- aGCGCCGccgaggugaucGcACCCCGGUcgugcGCCuCGACCGCCu -3'
miRNA:   3'- -CGCGGC-----------C-UGGGGCUA-----UGG-GUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 23964 0.75 0.211402
Target:  5'- cGgGCCGauuGACCUCG-UACCCGcgcGCCACCa -3'
miRNA:   3'- -CgCGGC---CUGGGGCuAUGGGU---UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 8819 0.78 0.14355
Target:  5'- cGCGCCGGGCCggUGAguugacgcgcUGCgCCGACCACCa -3'
miRNA:   3'- -CGCGGCCUGGg-GCU----------AUG-GGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 5372 0.75 0.195921
Target:  5'- cGCGCCGGGCaa--GUGCCCAcacaucACCACCg -3'
miRNA:   3'- -CGCGGCCUGgggcUAUGGGU------UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 14264 0.75 0.195921
Target:  5'- cGUGUCGucACCCCGucgacaccgccUGCCCAACCACCg -3'
miRNA:   3'- -CGCGGCc-UGGGGCu----------AUGGGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 13220 0.76 0.186159
Target:  5'- aGCGgUGGGCCUCGA---CCGGCCACCg -3'
miRNA:   3'- -CGCgGCCUGGGGCUaugGGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 35816 0.76 0.176828
Target:  5'- gGUGCCGuacGACCCCGcAUAgCCG-CCACCg -3'
miRNA:   3'- -CGCGGC---CUGGGGC-UAUgGGUuGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 4358 0.76 0.176828
Target:  5'- aGCGCCGGACggcacgCCCG-UGCCCugcucAUCGCCa -3'
miRNA:   3'- -CGCGGCCUG------GGGCuAUGGGu----UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 7861 0.77 0.163612
Target:  5'- cGCGCC-GACCCCGGUgGCCCGAgUGCUu -3'
miRNA:   3'- -CGCGGcCUGGGGCUA-UGGGUUgGUGG- -5'
23476 3' -58.3 NC_005259.1 + 42223 0.77 0.159407
Target:  5'- cGCGCCGccguCCCCGGccauCUCGACCACCu -3'
miRNA:   3'- -CGCGGCcu--GGGGCUau--GGGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 37697 0.77 0.159407
Target:  5'- cGCGCCGGacugauuuuGCCCUGccagACCCGaggcACCGCCg -3'
miRNA:   3'- -CGCGGCC---------UGGGGCua--UGGGU----UGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.