miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23476 3' -58.3 NC_005259.1 + 46925 0.66 0.64781
Target:  5'- uGCGCCG----CCGAgcuUGCCCGccgcGCCGCCg -3'
miRNA:   3'- -CGCGGCcuggGGCU---AUGGGU----UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 20477 0.66 0.658264
Target:  5'- cCGCCGucGACCUCGAcaccGCCCGGCaGCUc -3'
miRNA:   3'- cGCGGC--CUGGGGCUa---UGGGUUGgUGG- -5'
23476 3' -58.3 NC_005259.1 + 18408 0.66 0.668697
Target:  5'- uCGCC-GAgCCCGc-GCCCG-CCACCu -3'
miRNA:   3'- cGCGGcCUgGGGCuaUGGGUuGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 13465 0.66 0.658264
Target:  5'- gGCGCUGGugcucACCgCGcUGCCCGACgAUg -3'
miRNA:   3'- -CGCGGCC-----UGGgGCuAUGGGUUGgUGg -5'
23476 3' -58.3 NC_005259.1 + 36956 0.66 0.637342
Target:  5'- gGUGCCcgcgaGACCgCCucgGCCCGcACCGCCg -3'
miRNA:   3'- -CGCGGc----CUGG-GGcuaUGGGU-UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 51349 0.66 0.658264
Target:  5'- -aGCuCGGAUaugCCCGGUgGCaCCGGCaCACCg -3'
miRNA:   3'- cgCG-GCCUG---GGGCUA-UG-GGUUG-GUGG- -5'
23476 3' -58.3 NC_005259.1 + 27262 0.66 0.64781
Target:  5'- cGCGuaGGACCgauaCGccGCCUugAGCCGCCg -3'
miRNA:   3'- -CGCggCCUGGg---GCuaUGGG--UUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 60504 0.66 0.66557
Target:  5'- cGCGCCGGuguugucguagugcGCCauggccgggCCGggACgCAGCCGCUc -3'
miRNA:   3'- -CGCGGCC--------------UGG---------GGCuaUGgGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 55590 0.66 0.668697
Target:  5'- cGCGCUGG-CCaCgCGAUACCaCGucucGCgCGCCu -3'
miRNA:   3'- -CGCGGCCuGG-G-GCUAUGG-GU----UG-GUGG- -5'
23476 3' -58.3 NC_005259.1 + 26406 0.66 0.637342
Target:  5'- aCGCCGGGCgCggCGGUGCCgccguagaaCGcACCGCCg -3'
miRNA:   3'- cGCGGCCUGgG--GCUAUGG---------GU-UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 24340 0.66 0.637342
Target:  5'- cGCGCUGGccuACCgCCgGGUGCUC-GCaCACCg -3'
miRNA:   3'- -CGCGGCC---UGG-GG-CUAUGGGuUG-GUGG- -5'
23476 3' -58.3 NC_005259.1 + 8973 0.66 0.637342
Target:  5'- cGUGCCgGGACgUaGGUGCCagcggcgacggCAGCCGCCu -3'
miRNA:   3'- -CGCGG-CCUGgGgCUAUGG-----------GUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 14339 0.66 0.637342
Target:  5'- cGCGUgCGGGCCgCCGAcGCCauCAACuCACg -3'
miRNA:   3'- -CGCG-GCCUGG-GGCUaUGG--GUUG-GUGg -5'
23476 3' -58.3 NC_005259.1 + 36138 0.66 0.668697
Target:  5'- cCGCCGGGCUguCCGucGCCaUGGCCACg -3'
miRNA:   3'- cGCGGCCUGG--GGCuaUGG-GUUGGUGg -5'
23476 3' -58.3 NC_005259.1 + 30802 0.66 0.637342
Target:  5'- cCGCCGGAacaCCUGAgucggguagUCCGGCgCGCCg -3'
miRNA:   3'- cGCGGCCUg--GGGCUau-------GGGUUG-GUGG- -5'
23476 3' -58.3 NC_005259.1 + 16229 0.66 0.64781
Target:  5'- uGgGCCGaacgcACCCCGGUGCU--GCgCACCg -3'
miRNA:   3'- -CgCGGCc----UGGGGCUAUGGguUG-GUGG- -5'
23476 3' -58.3 NC_005259.1 + 23333 0.66 0.62687
Target:  5'- -aGCCGGAUuacaucgggCUCGAggcUGCCUgcgaGGCCGCCg -3'
miRNA:   3'- cgCGGCCUG---------GGGCU---AUGGG----UUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 55504 0.66 0.668697
Target:  5'- aGCGUcaCGaGGCCCacagCGAacugUGCCCAcagcGCCGCCu -3'
miRNA:   3'- -CGCG--GC-CUGGG----GCU----AUGGGU----UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 16454 0.66 0.679098
Target:  5'- cCGUCGG-CaUCGGUACCCcGCCGCa -3'
miRNA:   3'- cGCGGCCuGgGGCUAUGGGuUGGUGg -5'
23476 3' -58.3 NC_005259.1 + 16545 0.66 0.637342
Target:  5'- uGCGCCcgagcGACCagaGAU-CCCGcCCACCg -3'
miRNA:   3'- -CGCGGc----CUGGgg-CUAuGGGUuGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.