miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23476 3' -58.3 NC_005259.1 + 68806 0.66 0.679098
Target:  5'- gGUGUCGGugCCCGGUACau-GCUcUCg -3'
miRNA:   3'- -CGCGGCCugGGGCUAUGgguUGGuGG- -5'
23476 3' -58.3 NC_005259.1 + 68744 0.71 0.350659
Target:  5'- uUGCCGagcucGACCCCGGcgACCUcGCCAUCg -3'
miRNA:   3'- cGCGGC-----CUGGGGCUa-UGGGuUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 68713 0.7 0.427582
Target:  5'- cGCGUCGGugCCCGAgaaCUGGggUCGCCg -3'
miRNA:   3'- -CGCGGCCugGGGCUaugGGUU--GGUGG- -5'
23476 3' -58.3 NC_005259.1 + 68576 0.69 0.455356
Target:  5'- -aGgUGGACCUCG-UAUCCGgcgGCCACCg -3'
miRNA:   3'- cgCgGCCUGGGGCuAUGGGU---UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 67757 0.69 0.464828
Target:  5'- -gGCC--GCCCCGGccaCCGGCCACCg -3'
miRNA:   3'- cgCGGccUGGGGCUaugGGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 66852 0.68 0.554127
Target:  5'- cCGCaCGGGCCaCCGAUcgGCCUuguuCgCACCg -3'
miRNA:   3'- cGCG-GCCUGG-GGCUA--UGGGuu--G-GUGG- -5'
23476 3' -58.3 NC_005259.1 + 66654 0.69 0.464828
Target:  5'- uGCuGCCGGucggcgguGCUgCGAUGCUCAucguGCCGCCc -3'
miRNA:   3'- -CG-CGGCC--------UGGgGCUAUGGGU----UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 66267 0.7 0.427582
Target:  5'- cGCGCCGGGCggCG--GCUCAcgccGCCACCa -3'
miRNA:   3'- -CGCGGCCUGggGCuaUGGGU----UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 64685 0.67 0.564406
Target:  5'- cCGCCGcGCCgCCGAgcgaUACCCAcauaccgaugcACCACg -3'
miRNA:   3'- cGCGGCcUGG-GGCU----AUGGGU-----------UGGUGg -5'
23476 3' -58.3 NC_005259.1 + 63666 0.72 0.334955
Target:  5'- aCGCCGGACaCCuCGGgcaCCGGCgCGCCg -3'
miRNA:   3'- cGCGGCCUG-GG-GCUaugGGUUG-GUGG- -5'
23476 3' -58.3 NC_005259.1 + 63532 0.75 0.206128
Target:  5'- uGUGCUGGACCUuuucgaGGUGCUCGgcgGCCACCg -3'
miRNA:   3'- -CGCGGCCUGGGg-----CUAUGGGU---UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 63177 0.75 0.211402
Target:  5'- aGCGCCGccgaggugaucGcACCCCGGUcgugcGCCuCGACCGCCu -3'
miRNA:   3'- -CGCGGC-----------C-UGGGGCUA-----UGG-GUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 61949 0.68 0.543904
Target:  5'- gGUGCCgGGGCCaCCGcaGCCUcACgCGCCg -3'
miRNA:   3'- -CGCGG-CCUGG-GGCuaUGGGuUG-GUGG- -5'
23476 3' -58.3 NC_005259.1 + 60504 0.66 0.66557
Target:  5'- cGCGCCGGuguugucguagugcGCCauggccgggCCGggACgCAGCCGCUc -3'
miRNA:   3'- -CGCGGCC--------------UGG---------GGCuaUGgGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 58786 0.66 0.64467
Target:  5'- uGCGCCGGucgaggcggugauuGCCUCGGcgggcucgcgcUGCUCGgcacccucGCCGCCc -3'
miRNA:   3'- -CGCGGCC--------------UGGGGCU-----------AUGGGU--------UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 58440 0.67 0.574735
Target:  5'- uGCGCUGaucgguGGCCuuGGUgAUCgCGGCCACCa -3'
miRNA:   3'- -CGCGGC------CUGGggCUA-UGG-GUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 58168 0.67 0.616403
Target:  5'- gGCGCacgGGAUCUCGAcgcacguCUUGACCGCCg -3'
miRNA:   3'- -CGCGg--CCUGGGGCUau-----GGGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 57978 0.73 0.270075
Target:  5'- uCGCCGGgaucgugACCCCGGUcgAgCCAGCgACCa -3'
miRNA:   3'- cGCGGCC-------UGGGGCUA--UgGGUUGgUGG- -5'
23476 3' -58.3 NC_005259.1 + 56856 0.69 0.445057
Target:  5'- cGUGuuGGucagugcgagcacACCCuCGAUGagCCGACCGCCa -3'
miRNA:   3'- -CGCggCC-------------UGGG-GCUAUg-GGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 56388 0.69 0.455356
Target:  5'- cGCGUCGGcugaucgUCUCGAUgguGCCCGGCCcGCCg -3'
miRNA:   3'- -CGCGGCCu------GGGGCUA---UGGGUUGG-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.