miRNA display CGI


Results 41 - 60 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23476 3' -58.3 NC_005259.1 + 30386 0.67 0.585106
Target:  5'- gGCGagaaaCCGGGCCUCuaccGUAgCCAGCCGCa -3'
miRNA:   3'- -CGC-----GGCCUGGGGc---UAUgGGUUGGUGg -5'
23476 3' -58.3 NC_005259.1 + 11841 0.67 0.585106
Target:  5'- cCGCCGcACUCCGAccugccACCCGucggcgaacgugACCGCCg -3'
miRNA:   3'- cGCGGCcUGGGGCUa-----UGGGU------------UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 7285 0.67 0.578878
Target:  5'- nCGCCccGCCCCcaagcacuacaauugGGUGCCCGaguucACCGCCg -3'
miRNA:   3'- cGCGGccUGGGG---------------CUAUGGGU-----UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 31752 0.67 0.574735
Target:  5'- aGCGCUGGuguCCCCaccGCCCcgUCAUCg -3'
miRNA:   3'- -CGCGGCCu--GGGGcuaUGGGuuGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 58440 0.67 0.574735
Target:  5'- uGCGCUGaucgguGGCCuuGGUgAUCgCGGCCACCa -3'
miRNA:   3'- -CGCGGC------CUGGggCUA-UGG-GUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 33051 0.67 0.5737
Target:  5'- uUGCCGGGgucgcucgcgugcUUCUGGUAUCCGcugGCCACCu -3'
miRNA:   3'- cGCGGCCU-------------GGGGCUAUGGGU---UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 64685 0.67 0.564406
Target:  5'- cCGCCGcGCCgCCGAgcgaUACCCAcauaccgaugcACCACg -3'
miRNA:   3'- cGCGGCcUGG-GGCU----AUGGGU-----------UGGUGg -5'
23476 3' -58.3 NC_005259.1 + 35276 0.67 0.564406
Target:  5'- cGCGCCGGGguCgCCGAUguGCCCcuugaaguaGAUgACCg -3'
miRNA:   3'- -CGCGGCCU--GgGGCUA--UGGG---------UUGgUGG- -5'
23476 3' -58.3 NC_005259.1 + 11011 0.67 0.564406
Target:  5'- cGCGCCGGACgCgCCGAgGCagGAguUCGCCg -3'
miRNA:   3'- -CGCGGCCUG-G-GGCUaUGggUU--GGUGG- -5'
23476 3' -58.3 NC_005259.1 + 39359 0.67 0.562346
Target:  5'- cGUGCCGGGCCUCGucgggaacguCCCAGuucgUCACg -3'
miRNA:   3'- -CGCGGCCUGGGGCuau-------GGGUU----GGUGg -5'
23476 3' -58.3 NC_005259.1 + 25095 0.68 0.555153
Target:  5'- uGCGCCc-GCCCCGAgcaagggcaaggucgACCCcGCCgACCu -3'
miRNA:   3'- -CGCGGccUGGGGCUa--------------UGGGuUGG-UGG- -5'
23476 3' -58.3 NC_005259.1 + 66852 0.68 0.554127
Target:  5'- cCGCaCGGGCCaCCGAUcgGCCUuguuCgCACCg -3'
miRNA:   3'- cGCG-GCCUGG-GGCUA--UGGGuu--G-GUGG- -5'
23476 3' -58.3 NC_005259.1 + 50412 0.68 0.554127
Target:  5'- cGCGCCGGuGCCuuGAccgGCUCGGgCAgCg -3'
miRNA:   3'- -CGCGGCC-UGGggCUa--UGGGUUgGUgG- -5'
23476 3' -58.3 NC_005259.1 + 3862 0.68 0.554127
Target:  5'- aCGCCGGucgagcGCCUCGA-GCCC-ACC-CCg -3'
miRNA:   3'- cGCGGCC------UGGGGCUaUGGGuUGGuGG- -5'
23476 3' -58.3 NC_005259.1 + 48501 0.68 0.554127
Target:  5'- cGCGCUugaGGGCCgCGAcUugCCGcACUGCCg -3'
miRNA:   3'- -CGCGG---CCUGGgGCU-AugGGU-UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 61949 0.68 0.543904
Target:  5'- gGUGCCgGGGCCaCCGcaGCCUcACgCGCCg -3'
miRNA:   3'- -CGCGG-CCUGG-GGCuaUGGGuUG-GUGG- -5'
23476 3' -58.3 NC_005259.1 + 49441 0.68 0.543904
Target:  5'- aGCGCCGccuuggucGGCagCCgGAUGCCCAGCagguCGCCc -3'
miRNA:   3'- -CGCGGC--------CUG--GGgCUAUGGGUUG----GUGG- -5'
23476 3' -58.3 NC_005259.1 + 13096 0.68 0.543904
Target:  5'- gGUGCCaccGACCCCGGcccGCUCGGCgGCUa -3'
miRNA:   3'- -CGCGGc--CUGGGGCUa--UGGGUUGgUGG- -5'
23476 3' -58.3 NC_005259.1 + 41405 0.68 0.533744
Target:  5'- cGCGCCGcucgggguGCCCaCGAUguGCaCgGGCCGCCa -3'
miRNA:   3'- -CGCGGCc-------UGGG-GCUA--UG-GgUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 33646 0.68 0.523652
Target:  5'- cGCGCuCGGGaaaucagCCGAgggUGCCCGGCCcACCc -3'
miRNA:   3'- -CGCG-GCCUgg-----GGCU---AUGGGUUGG-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.