Results 21 - 40 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23476 | 3' | -58.3 | NC_005259.1 | + | 30802 | 0.66 | 0.637342 |
Target: 5'- cCGCCGGAacaCCUGAgucggguagUCCGGCgCGCCg -3' miRNA: 3'- cGCGGCCUg--GGGCUau-------GGGUUG-GUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 26406 | 0.66 | 0.637342 |
Target: 5'- aCGCCGGGCgCggCGGUGCCgccguagaaCGcACCGCCg -3' miRNA: 3'- cGCGGCCUGgG--GCUAUGG---------GU-UGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 36956 | 0.66 | 0.637342 |
Target: 5'- gGUGCCcgcgaGACCgCCucgGCCCGcACCGCCg -3' miRNA: 3'- -CGCGGc----CUGG-GGcuaUGGGU-UGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 8973 | 0.66 | 0.637342 |
Target: 5'- cGUGCCgGGACgUaGGUGCCagcggcgacggCAGCCGCCu -3' miRNA: 3'- -CGCGG-CCUGgGgCUAUGG-----------GUUGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 16545 | 0.66 | 0.637342 |
Target: 5'- uGCGCCcgagcGACCagaGAU-CCCGcCCACCg -3' miRNA: 3'- -CGCGGc----CUGGgg-CUAuGGGUuGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 14339 | 0.66 | 0.637342 |
Target: 5'- cGCGUgCGGGCCgCCGAcGCCauCAACuCACg -3' miRNA: 3'- -CGCG-GCCUGG-GGCUaUGG--GUUG-GUGg -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 23333 | 0.66 | 0.62687 |
Target: 5'- -aGCCGGAUuacaucgggCUCGAggcUGCCUgcgaGGCCGCCg -3' miRNA: 3'- cgCGGCCUG---------GGGCU---AUGGG----UUGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 12293 | 0.67 | 0.620588 |
Target: 5'- cCGCCGcGCCUCGAUGCgggCAaugucggugcgcaccGCCGCCa -3' miRNA: 3'- cGCGGCcUGGGGCUAUGg--GU---------------UGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 53273 | 0.67 | 0.616403 |
Target: 5'- uCGCCGGugCCgccaaGAUcgACCuCAGCC-CCu -3' miRNA: 3'- cGCGGCCugGGg----CUA--UGG-GUUGGuGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 18707 | 0.67 | 0.616403 |
Target: 5'- gGCgGUCuGACCUCGAUcAUCgGGCCGCCc -3' miRNA: 3'- -CG-CGGcCUGGGGCUA-UGGgUUGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 58168 | 0.67 | 0.616403 |
Target: 5'- gGCGCacgGGAUCUCGAcgcacguCUUGACCGCCg -3' miRNA: 3'- -CGCGg--CCUGGGGCUau-----GGGUUGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 13889 | 0.67 | 0.616403 |
Target: 5'- gGUGacCCGaGACCCCGAcaACCaaCAACCACa -3' miRNA: 3'- -CGC--GGC-CUGGGGCUa-UGG--GUUGGUGg -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 56311 | 0.67 | 0.605947 |
Target: 5'- -gGCCGGACCCucgucgccguCGAgcaAUCCGACUuCCu -3' miRNA: 3'- cgCGGCCUGGG----------GCUa--UGGGUUGGuGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 50093 | 0.67 | 0.605947 |
Target: 5'- uCGCCGaugguGCgCCCGAgguUGCCCGuacgcacgggcACCGCCa -3' miRNA: 3'- cGCGGCc----UG-GGGCU---AUGGGU-----------UGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 30125 | 0.67 | 0.599683 |
Target: 5'- uUGCCGuccGGCUgCGAUACCUcgggcagcucgaccgGGCCGCCu -3' miRNA: 3'- cGCGGC---CUGGgGCUAUGGG---------------UUGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 45520 | 0.67 | 0.596555 |
Target: 5'- cGCGCCGGuguugGCCgCCGuggcugcgagcggguUGCUCGccggGCCACCc -3' miRNA: 3'- -CGCGGCC-----UGG-GGCu--------------AUGGGU----UGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 1840 | 0.67 | 0.595512 |
Target: 5'- uCGCCGcuGCCgCCGAgGCCgagaaAGCCGCCg -3' miRNA: 3'- cGCGGCc-UGG-GGCUaUGGg----UUGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 40679 | 0.67 | 0.589265 |
Target: 5'- aGCGCCuuGGugCUCaccgGCCCGaugaucggggugcccGCCACCa -3' miRNA: 3'- -CGCGG--CCugGGGcua-UGGGU---------------UGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 17034 | 0.67 | 0.589265 |
Target: 5'- gGCGCUGGcaucgacaaccgcgACCCCGAggcggUGCgCGcauuugugcgucagGCCGCCg -3' miRNA: 3'- -CGCGGCC--------------UGGGGCU-----AUGgGU--------------UGGUGG- -5' |
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23476 | 3' | -58.3 | NC_005259.1 | + | 46884 | 0.67 | 0.585106 |
Target: 5'- cGCGCCGccGCCCgCGAUGagCGcCCGCCg -3' miRNA: 3'- -CGCGGCc-UGGG-GCUAUggGUuGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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