miRNA display CGI


Results 41 - 60 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23476 3' -58.3 NC_005259.1 + 16545 0.66 0.637342
Target:  5'- uGCGCCcgagcGACCagaGAU-CCCGcCCACCg -3'
miRNA:   3'- -CGCGGc----CUGGgg-CUAuGGGUuGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 17034 0.67 0.589265
Target:  5'- gGCGCUGGcaucgacaaccgcgACCCCGAggcggUGCgCGcauuugugcgucagGCCGCCg -3'
miRNA:   3'- -CGCGGCC--------------UGGGGCU-----AUGgGU--------------UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 17704 0.69 0.474402
Target:  5'- uUGUCGG-UCgCGAcUACCCGAUCACCg -3'
miRNA:   3'- cGCGGCCuGGgGCU-AUGGGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 17770 0.69 0.483103
Target:  5'- cGCGCCGGGCCgagcgcaCCGAgcgUGCgC-ACCGCg -3'
miRNA:   3'- -CGCGGCCUGG-------GGCU---AUGgGuUGGUGg -5'
23476 3' -58.3 NC_005259.1 + 17936 0.71 0.392161
Target:  5'- cGCGcCCGGugUCCacgccucACCCAagacGCCACCg -3'
miRNA:   3'- -CGC-GGCCugGGGcua----UGGGU----UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 18265 0.74 0.256618
Target:  5'- cGCGCCugaaccugagacGACCUCGAcGCCCGacgaGCCGCCg -3'
miRNA:   3'- -CGCGGc-----------CUGGGGCUaUGGGU----UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 18408 0.66 0.668697
Target:  5'- uCGCC-GAgCCCGc-GCCCG-CCACCu -3'
miRNA:   3'- cGCGGcCUgGGGCuaUGGGUuGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 18465 0.71 0.392161
Target:  5'- cCGCCGG-UCCUGAgccgUGCCCGA-CGCCg -3'
miRNA:   3'- cGCGGCCuGGGGCU----AUGGGUUgGUGG- -5'
23476 3' -58.3 NC_005259.1 + 18573 0.74 0.251638
Target:  5'- cCGCCGccGACCCCGAgcagaCCGACC-CCg -3'
miRNA:   3'- cGCGGC--CUGGGGCUaug--GGUUGGuGG- -5'
23476 3' -58.3 NC_005259.1 + 18707 0.67 0.616403
Target:  5'- gGCgGUCuGACCUCGAUcAUCgGGCCGCCc -3'
miRNA:   3'- -CG-CGGcCUGGGGCUA-UGGgUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 19261 0.7 0.418549
Target:  5'- cUGCCGGGCcgCCCGAUGgaagUCaUGACCACCa -3'
miRNA:   3'- cGCGGCCUG--GGGCUAU----GG-GUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 19361 0.68 0.512636
Target:  5'- aCGCCGGgaucaagGCCCCGcUGaucaCCGGCC-CCa -3'
miRNA:   3'- cGCGGCC-------UGGGGCuAUg---GGUUGGuGG- -5'
23476 3' -58.3 NC_005259.1 + 20143 0.72 0.342742
Target:  5'- cGCGaugaCGG-CagCCGGUGCCCuGGCCACCg -3'
miRNA:   3'- -CGCg---GCCuGg-GGCUAUGGG-UUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 20477 0.66 0.658264
Target:  5'- cCGCCGucGACCUCGAcaccGCCCGGCaGCUc -3'
miRNA:   3'- cGCGGC--CUGGGGCUa---UGGGUUGgUGG- -5'
23476 3' -58.3 NC_005259.1 + 20699 0.69 0.496787
Target:  5'- cGCGCuCGGuggucgaagguuucACCCCGccgcgcgaaaugacGUAuugguccggccauCCCGACCACCg -3'
miRNA:   3'- -CGCG-GCC--------------UGGGGC--------------UAU-------------GGGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 23333 0.66 0.62687
Target:  5'- -aGCCGGAUuacaucgggCUCGAggcUGCCUgcgaGGCCGCCg -3'
miRNA:   3'- cgCGGCCUG---------GGGCU---AUGGG----UUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 23674 0.69 0.49384
Target:  5'- cCGCC-GACCCCGAgcagGCgCAcgcagACUACCg -3'
miRNA:   3'- cGCGGcCUGGGGCUa---UGgGU-----UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 23717 0.71 0.358705
Target:  5'- cGCGCCGGACggUUCGGUGCUCAcgugggacgGCgACCc -3'
miRNA:   3'- -CGCGGCCUG--GGGCUAUGGGU---------UGgUGG- -5'
23476 3' -58.3 NC_005259.1 + 23964 0.75 0.211402
Target:  5'- cGgGCCGauuGACCUCG-UACCCGcgcGCCACCa -3'
miRNA:   3'- -CgCGGC---CUGGGGCuAUGGGU---UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 24340 0.66 0.637342
Target:  5'- cGCGCUGGccuACCgCCgGGUGCUC-GCaCACCg -3'
miRNA:   3'- -CGCGGCC---UGG-GG-CUAUGGGuUG-GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.