miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23479 5' -50.9 NC_005259.1 + 3065 0.67 0.911521
Target:  5'- -----cCGUCGACGGGccgaGGCCGACAa- -3'
miRNA:   3'- ucuuacGCAGCUGCCU----UUGGCUGUcg -5'
23479 5' -50.9 NC_005259.1 + 3122 0.66 0.958397
Target:  5'- ----cGCGgcacCGugGGcAGCgGACGGCa -3'
miRNA:   3'- ucuuaCGCa---GCugCCuUUGgCUGUCG- -5'
23479 5' -50.9 NC_005259.1 + 3311 0.77 0.416281
Target:  5'- cGAGcgcUGCGUCGACGuGAGcGCCGgGCAGCu -3'
miRNA:   3'- uCUU---ACGCAGCUGC-CUU-UGGC-UGUCG- -5'
23479 5' -50.9 NC_005259.1 + 4118 0.66 0.949903
Target:  5'- cGGcgGCcUCGACGuGGccaaGACCGuCGGCg -3'
miRNA:   3'- uCUuaCGcAGCUGC-CU----UUGGCuGUCG- -5'
23479 5' -50.9 NC_005259.1 + 5072 0.66 0.958397
Target:  5'- uGGGccGgGUCGACGG--GCCGGugucacCGGCg -3'
miRNA:   3'- -UCUuaCgCAGCUGCCuuUGGCU------GUCG- -5'
23479 5' -50.9 NC_005259.1 + 6695 0.72 0.691947
Target:  5'- aAGAGUGgCG-CGACacGAucAACCGGCAGCa -3'
miRNA:   3'- -UCUUAC-GCaGCUGc-CU--UUGGCUGUCG- -5'
23479 5' -50.9 NC_005259.1 + 7880 0.66 0.958397
Target:  5'- cGAGUGCuUgGAcuCGGGcagccGCCGAUAGCg -3'
miRNA:   3'- uCUUACGcAgCU--GCCUu----UGGCUGUCG- -5'
23479 5' -50.9 NC_005259.1 + 8315 0.67 0.911521
Target:  5'- ----cGCcUUGuCGGAGcuGCCGACGGCg -3'
miRNA:   3'- ucuuaCGcAGCuGCCUU--UGGCUGUCG- -5'
23479 5' -50.9 NC_005259.1 + 9152 0.69 0.833814
Target:  5'- --cGUGCccGUCGACGGcauGCCGgugGCAGCc -3'
miRNA:   3'- ucuUACG--CAGCUGCCuu-UGGC---UGUCG- -5'
23479 5' -50.9 NC_005259.1 + 10625 0.72 0.72439
Target:  5'- uGggUGCGUCGA----GGCCGaACAGCu -3'
miRNA:   3'- uCuuACGCAGCUgccuUUGGC-UGUCG- -5'
23479 5' -50.9 NC_005259.1 + 11293 0.66 0.962249
Target:  5'- gAGGAcG-GUCGACGGGcgugaGGCCGagacgggcgcGCAGCu -3'
miRNA:   3'- -UCUUaCgCAGCUGCCU-----UUGGC----------UGUCG- -5'
23479 5' -50.9 NC_005259.1 + 18334 0.73 0.625782
Target:  5'- -cGGUGCGuUCGugGucGAcGCCGACGGCg -3'
miRNA:   3'- ucUUACGC-AGCugC--CUuUGGCUGUCG- -5'
23479 5' -50.9 NC_005259.1 + 19216 0.74 0.58164
Target:  5'- cGGGcgGCGaCGugGGAcACCGAguCGGCg -3'
miRNA:   3'- -UCUuaCGCaGCugCCUuUGGCU--GUCG- -5'
23479 5' -50.9 NC_005259.1 + 21009 0.66 0.940327
Target:  5'- ----gGCGgCGACccuGACCGGCAGCu -3'
miRNA:   3'- ucuuaCGCaGCUGccuUUGGCUGUCG- -5'
23479 5' -50.9 NC_005259.1 + 21624 0.67 0.929643
Target:  5'- gAGGcUGUGUCGcGCGGAGuguucGCCGA-GGCu -3'
miRNA:   3'- -UCUuACGCAGC-UGCCUU-----UGGCUgUCG- -5'
23479 5' -50.9 NC_005259.1 + 22311 0.66 0.954283
Target:  5'- cAGA--GC-UCGGCGGAuacACCGAC-GCa -3'
miRNA:   3'- -UCUuaCGcAGCUGCCUu--UGGCUGuCG- -5'
23479 5' -50.9 NC_005259.1 + 23615 0.67 0.911521
Target:  5'- ----cGCGU-GGCGGcAGCCaGACGGCu -3'
miRNA:   3'- ucuuaCGCAgCUGCCuUUGG-CUGUCG- -5'
23479 5' -50.9 NC_005259.1 + 23657 0.66 0.945252
Target:  5'- cGAcgGCGaCGGCuGGAccGCCGACcccgAGCa -3'
miRNA:   3'- uCUuaCGCaGCUG-CCUu-UGGCUG----UCG- -5'
23479 5' -50.9 NC_005259.1 + 24415 0.68 0.904925
Target:  5'- -cAAUGaCcUCGGCGaGGAAgCGACAGCg -3'
miRNA:   3'- ucUUAC-GcAGCUGC-CUUUgGCUGUCG- -5'
23479 5' -50.9 NC_005259.1 + 24739 0.66 0.962249
Target:  5'- -uGAUGCGgUGugGGguGCCGA-GGCg -3'
miRNA:   3'- ucUUACGCaGCugCCuuUGGCUgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.