Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23479 | 5' | -50.9 | NC_005259.1 | + | 33903 | 0.66 | 0.962249 |
Target: 5'- ----cGCG-CGACGGGccgaGACCGGCcacggugcgAGCa -3' miRNA: 3'- ucuuaCGCaGCUGCCU----UUGGCUG---------UCG- -5' |
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23479 | 5' | -50.9 | NC_005259.1 | + | 67211 | 0.69 | 0.842683 |
Target: 5'- ----cGCuGUCGGCGGGGucgauGCCGACcacGGCg -3' miRNA: 3'- ucuuaCG-CAGCUGCCUU-----UGGCUG---UCG- -5' |
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23479 | 5' | -50.9 | NC_005259.1 | + | 55551 | 0.69 | 0.85974 |
Target: 5'- ----gGCGUCGA-GGAuGCCGAaAGCg -3' miRNA: 3'- ucuuaCGCAGCUgCCUuUGGCUgUCG- -5' |
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23479 | 5' | -50.9 | NC_005259.1 | + | 53362 | 0.69 | 0.867912 |
Target: 5'- ----cGCcUCGACGGcuAAACCGAgaCAGCa -3' miRNA: 3'- ucuuaCGcAGCUGCC--UUUGGCU--GUCG- -5' |
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23479 | 5' | -50.9 | NC_005259.1 | + | 63549 | 0.69 | 0.867912 |
Target: 5'- -aGGUGC-UCGGCGGccACCGAC-GCg -3' miRNA: 3'- ucUUACGcAGCUGCCuuUGGCUGuCG- -5' |
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23479 | 5' | -50.9 | NC_005259.1 | + | 65115 | 0.68 | 0.883504 |
Target: 5'- -cAGUGCGUCaccguCGGcgcACCGGCGGCc -3' miRNA: 3'- ucUUACGCAGcu---GCCuu-UGGCUGUCG- -5' |
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23479 | 5' | -50.9 | NC_005259.1 | + | 47181 | 0.68 | 0.904925 |
Target: 5'- cGAAg--GUCGGCGGu-GCCGuCGGCg -3' miRNA: 3'- uCUUacgCAGCUGCCuuUGGCuGUCG- -5' |
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23479 | 5' | -50.9 | NC_005259.1 | + | 24415 | 0.68 | 0.904925 |
Target: 5'- -cAAUGaCcUCGGCGaGGAAgCGACAGCg -3' miRNA: 3'- ucUUAC-GcAGCUGC-CUUUgGCUGUCG- -5' |
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23479 | 5' | -50.9 | NC_005259.1 | + | 8315 | 0.67 | 0.911521 |
Target: 5'- ----cGCcUUGuCGGAGcuGCCGACGGCg -3' miRNA: 3'- ucuuaCGcAGCuGCCUU--UGGCUGUCG- -5' |
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23479 | 5' | -50.9 | NC_005259.1 | + | 9152 | 0.69 | 0.833814 |
Target: 5'- --cGUGCccGUCGACGGcauGCCGgugGCAGCc -3' miRNA: 3'- ucuUACG--CAGCUGCCuu-UGGC---UGUCG- -5' |
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23479 | 5' | -50.9 | NC_005259.1 | + | 58922 | 0.7 | 0.786449 |
Target: 5'- cGGucuUGuCGUCGGCGGgcGCggUGGCAGCg -3' miRNA: 3'- -UCuu-AC-GCAGCUGCCuuUG--GCUGUCG- -5' |
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23479 | 5' | -50.9 | NC_005259.1 | + | 53908 | 0.71 | 0.755995 |
Target: 5'- ---uUG-GUCG-CGGAAACCGACGGg -3' miRNA: 3'- ucuuACgCAGCuGCCUUUGGCUGUCg -5' |
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23479 | 5' | -50.9 | NC_005259.1 | + | 19216 | 0.74 | 0.58164 |
Target: 5'- cGGGcgGCGaCGugGGAcACCGAguCGGCg -3' miRNA: 3'- -UCUuaCGCaGCugCCUuUGGCU--GUCG- -5' |
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23479 | 5' | -50.9 | NC_005259.1 | + | 18334 | 0.73 | 0.625782 |
Target: 5'- -cGGUGCGuUCGugGucGAcGCCGACGGCg -3' miRNA: 3'- ucUUACGC-AGCugC--CUuUGGCUGUCG- -5' |
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23479 | 5' | -50.9 | NC_005259.1 | + | 61740 | 0.72 | 0.691947 |
Target: 5'- aGGuGUGCGUcCGGCGaGAucuGugCGGCGGCa -3' miRNA: 3'- -UCuUACGCA-GCUGC-CU---UugGCUGUCG- -5' |
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23479 | 5' | -50.9 | NC_005259.1 | + | 6695 | 0.72 | 0.691947 |
Target: 5'- aAGAGUGgCG-CGACacGAucAACCGGCAGCa -3' miRNA: 3'- -UCUUAC-GCaGCUGc-CU--UUGGCUGUCG- -5' |
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23479 | 5' | -50.9 | NC_005259.1 | + | 46997 | 0.72 | 0.701749 |
Target: 5'- gAGggUGCGccacgCGA-GGAAGCCGACcacgaccgccuccAGCa -3' miRNA: 3'- -UCuuACGCa----GCUgCCUUUGGCUG-------------UCG- -5' |
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23479 | 5' | -50.9 | NC_005259.1 | + | 58619 | 0.72 | 0.702835 |
Target: 5'- uGGcUGaUGUCGGC-GAAACCGACAGUg -3' miRNA: 3'- uCUuAC-GCAGCUGcCUUUGGCUGUCG- -5' |
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23479 | 5' | -50.9 | NC_005259.1 | + | 10625 | 0.72 | 0.72439 |
Target: 5'- uGggUGCGUCGA----GGCCGaACAGCu -3' miRNA: 3'- uCuuACGCAGCUgccuUUGGC-UGUCG- -5' |
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23479 | 5' | -50.9 | NC_005259.1 | + | 35974 | 0.71 | 0.735033 |
Target: 5'- ----cGCuGUcaaCGGCgGGAAACCGACGGCg -3' miRNA: 3'- ucuuaCG-CA---GCUG-CCUUUGGCUGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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