miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23482 5' -53.1 NC_005259.1 + 57064 0.66 0.899178
Target:  5'- -cCGUGAucggguCGAACGCGUCGAgGauguCGGg -3'
miRNA:   3'- caGCGCUu-----GCUUGCGUAGCUgU----GCCa -5'
23482 5' -53.1 NC_005259.1 + 40064 0.66 0.89849
Target:  5'- gGUCGCG-AUGAcccaugggccgacGCGCAcCGAgCGCGGa -3'
miRNA:   3'- -CAGCGCuUGCU-------------UGCGUaGCU-GUGCCa -5'
23482 5' -53.1 NC_005259.1 + 66988 0.66 0.892183
Target:  5'- aUCGCGuuguACGccucACGCA-CGACACGcGUg -3'
miRNA:   3'- cAGCGCu---UGCu---UGCGUaGCUGUGC-CA- -5'
23482 5' -53.1 NC_005259.1 + 61287 0.66 0.884929
Target:  5'- -aUGCcGACGAACGCGagCGGCugauCGGUg -3'
miRNA:   3'- caGCGcUUGCUUGCGUa-GCUGu---GCCA- -5'
23482 5' -53.1 NC_005259.1 + 66898 0.66 0.882703
Target:  5'- aUCGUGAACGGcgguagauccggcaGCGCGcggugcUCGAC-CGGg -3'
miRNA:   3'- cAGCGCUUGCU--------------UGCGU------AGCUGuGCCa -5'
23482 5' -53.1 NC_005259.1 + 40366 0.66 0.877421
Target:  5'- -cCGCGc-CGAGgGCAugaggucuuccaUCGACACGGg -3'
miRNA:   3'- caGCGCuuGCUUgCGU------------AGCUGUGCCa -5'
23482 5' -53.1 NC_005259.1 + 6382 0.66 0.877421
Target:  5'- -gCGCGAugGucAACGUcauuuUCGAgGCGGUg -3'
miRNA:   3'- caGCGCUugC--UUGCGu----AGCUgUGCCA- -5'
23482 5' -53.1 NC_005259.1 + 55012 0.66 0.877421
Target:  5'- cUCGCuuGGCGGuCGUcUCGGCACGGg -3'
miRNA:   3'- cAGCGc-UUGCUuGCGuAGCUGUGCCa -5'
23482 5' -53.1 NC_005259.1 + 49994 0.67 0.844964
Target:  5'- aUCGCGuGCGGACGgCugcccUCGuGCACGGg -3'
miRNA:   3'- cAGCGCuUGCUUGC-Gu----AGC-UGUGCCa -5'
23482 5' -53.1 NC_005259.1 + 56378 0.67 0.844964
Target:  5'- cGUCGCGGGC---CGCGUCGGCugaucgucucgAUGGUg -3'
miRNA:   3'- -CAGCGCUUGcuuGCGUAGCUG-----------UGCCA- -5'
23482 5' -53.1 NC_005259.1 + 41590 0.67 0.844964
Target:  5'- -gCGUGAGCGGucGCGCGUCGGuguuuCGGa -3'
miRNA:   3'- caGCGCUUGCU--UGCGUAGCUgu---GCCa -5'
23482 5' -53.1 NC_005259.1 + 24031 0.67 0.81829
Target:  5'- --gGCGAAauggaaccgcCGcAACGuCGUCGGCGCGGUg -3'
miRNA:   3'- cagCGCUU----------GC-UUGC-GUAGCUGUGCCA- -5'
23482 5' -53.1 NC_005259.1 + 59401 0.67 0.815523
Target:  5'- -gCGCGAGCGugaccucgcgcAugGCGUCGGCggccaugaagaacgGCGGUu -3'
miRNA:   3'- caGCGCUUGC-----------UugCGUAGCUG--------------UGCCA- -5'
23482 5' -53.1 NC_005259.1 + 46599 0.68 0.809001
Target:  5'- --gGCGAGC-AGCGCGUCGuugGCGGUc -3'
miRNA:   3'- cagCGCUUGcUUGCGUAGCug-UGCCA- -5'
23482 5' -53.1 NC_005259.1 + 36243 0.68 0.780082
Target:  5'- -gCGCGAGCGccUGCGUCGGCAgcgccacgcCGGa -3'
miRNA:   3'- caGCGCUUGCuuGCGUAGCUGU---------GCCa -5'
23482 5' -53.1 NC_005259.1 + 42591 0.68 0.780082
Target:  5'- -gCGUGAGCGAGCa-GUCGACAuCGGc -3'
miRNA:   3'- caGCGCUUGCUUGcgUAGCUGU-GCCa -5'
23482 5' -53.1 NC_005259.1 + 52820 0.68 0.770126
Target:  5'- --gGCGAGuuuuCGAGgGCAuccUCGACACGGa -3'
miRNA:   3'- cagCGCUU----GCUUgCGU---AGCUGUGCCa -5'
23482 5' -53.1 NC_005259.1 + 60851 0.69 0.739463
Target:  5'- gGUCGCGAgacucGCGGGuCGCGUUGAaucgaugACGGUg -3'
miRNA:   3'- -CAGCGCU-----UGCUU-GCGUAGCUg------UGCCA- -5'
23482 5' -53.1 NC_005259.1 + 4345 0.69 0.718471
Target:  5'- cGUCGCGGugAUGAGCGCcggaCGGCACGc- -3'
miRNA:   3'- -CAGCGCU--UGCUUGCGua--GCUGUGCca -5'
23482 5' -53.1 NC_005259.1 + 63470 0.7 0.686379
Target:  5'- -cCGCG--UGAuCGCGUCGAUACGGg -3'
miRNA:   3'- caGCGCuuGCUuGCGUAGCUGUGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.