Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23483 | 3' | -53.3 | NC_005259.1 | + | 55250 | 0.66 | 0.887593 |
Target: 5'- cCUAUGUCGGGGU-CCACc---CCACg -3' miRNA: 3'- cGAUGCAGCUCCGuGGUGcauaGGUG- -5' |
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23483 | 3' | -53.3 | NC_005259.1 | + | 45976 | 0.66 | 0.887593 |
Target: 5'- aGCUugG-CGAGuGUGuCCGCGUAcaUCUGCg -3' miRNA: 3'- -CGAugCaGCUC-CGU-GGUGCAU--AGGUG- -5' |
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23483 | 3' | -53.3 | NC_005259.1 | + | 63444 | 0.66 | 0.880154 |
Target: 5'- gGCgagACaUCGAGGCccauggccaACCGCGUGaUCGCg -3' miRNA: 3'- -CGa--UGcAGCUCCG---------UGGUGCAUaGGUG- -5' |
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23483 | 3' | -53.3 | NC_005259.1 | + | 16146 | 0.66 | 0.880154 |
Target: 5'- uGC-ACGaCGAGGUugUG-GUGUCCACu -3' miRNA: 3'- -CGaUGCaGCUCCGugGUgCAUAGGUG- -5' |
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23483 | 3' | -53.3 | NC_005259.1 | + | 48405 | 0.66 | 0.872464 |
Target: 5'- cGCccgcCGUCGAGuCACCGCGaccgCCACc -3' miRNA: 3'- -CGau--GCAGCUCcGUGGUGCaua-GGUG- -5' |
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23483 | 3' | -53.3 | NC_005259.1 | + | 20343 | 0.66 | 0.872464 |
Target: 5'- cCUAUGgCGGgcGGUACUACGcGUCCACc -3' miRNA: 3'- cGAUGCaGCU--CCGUGGUGCaUAGGUG- -5' |
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23483 | 3' | -53.3 | NC_005259.1 | + | 9683 | 0.66 | 0.872464 |
Target: 5'- cGCUGCcgGUCGAGGuCGCCGC----UCACu -3' miRNA: 3'- -CGAUG--CAGCUCC-GUGGUGcauaGGUG- -5' |
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23483 | 3' | -53.3 | NC_005259.1 | + | 27531 | 0.66 | 0.853851 |
Target: 5'- cGC--CGUCGAGGCcCCACGgcgggauguugcggCCACc -3' miRNA: 3'- -CGauGCAGCUCCGuGGUGCaua-----------GGUG- -5' |
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23483 | 3' | -53.3 | NC_005259.1 | + | 5424 | 0.66 | 0.847941 |
Target: 5'- cGCcACGUCGAGGUcugcGCC-CGcugCCGCc -3' miRNA: 3'- -CGaUGCAGCUCCG----UGGuGCauaGGUG- -5' |
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23483 | 3' | -53.3 | NC_005259.1 | + | 42271 | 0.66 | 0.847941 |
Target: 5'- --cACGUCGAGGC-CCuuGacAUCCAUg -3' miRNA: 3'- cgaUGCAGCUCCGuGGugCa-UAGGUG- -5' |
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23483 | 3' | -53.3 | NC_005259.1 | + | 8472 | 0.67 | 0.83046 |
Target: 5'- aGCUGCa-CGA-GCACCGCGcUGUCgGCa -3' miRNA: 3'- -CGAUGcaGCUcCGUGGUGC-AUAGgUG- -5' |
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23483 | 3' | -53.3 | NC_005259.1 | + | 1844 | 0.67 | 0.82049 |
Target: 5'- cGCUGCcGcCGAGGCcgagaaagccgccGCCGCGU-UCCGu -3' miRNA: 3'- -CGAUG-CaGCUCCG-------------UGGUGCAuAGGUg -5' |
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23483 | 3' | -53.3 | NC_005259.1 | + | 50903 | 0.67 | 0.812155 |
Target: 5'- cGCUGCGUgCGAuaGCGCCGCaugagCCGCa -3' miRNA: 3'- -CGAUGCA-GCUc-CGUGGUGcaua-GGUG- -5' |
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23483 | 3' | -53.3 | NC_005259.1 | + | 62946 | 0.67 | 0.812155 |
Target: 5'- cGCUGCuGcCG-GGCACCGC-UGUCCuCg -3' miRNA: 3'- -CGAUG-CaGCuCCGUGGUGcAUAGGuG- -5' |
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23483 | 3' | -53.3 | NC_005259.1 | + | 67124 | 0.67 | 0.812155 |
Target: 5'- cGCUGCGgucgugCGuGaGCACCGCuGUGagCCGCu -3' miRNA: 3'- -CGAUGCa-----GCuC-CGUGGUG-CAUa-GGUG- -5' |
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23483 | 3' | -53.3 | NC_005259.1 | + | 24857 | 0.67 | 0.808401 |
Target: 5'- cGCUACGcCGAGGC-CCGCcucgcucugaCCGCu -3' miRNA: 3'- -CGAUGCaGCUCCGuGGUGcaua------GGUG- -5' |
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23483 | 3' | -53.3 | NC_005259.1 | + | 36861 | 0.67 | 0.802716 |
Target: 5'- cGCUGCGcCGuugcuGGCACCGC----CCGCg -3' miRNA: 3'- -CGAUGCaGCu----CCGUGGUGcauaGGUG- -5' |
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23483 | 3' | -53.3 | NC_005259.1 | + | 53023 | 0.67 | 0.802716 |
Target: 5'- uGCggugGCGUCGAGGCAUCGUGaccUCGCg -3' miRNA: 3'- -CGa---UGCAGCUCCGUGGUGCauaGGUG- -5' |
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23483 | 3' | -53.3 | NC_005259.1 | + | 37980 | 0.68 | 0.783321 |
Target: 5'- -gUGCGUCGuacuGCGCCuGCGUGcccuUCCACa -3' miRNA: 3'- cgAUGCAGCuc--CGUGG-UGCAU----AGGUG- -5' |
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23483 | 3' | -53.3 | NC_005259.1 | + | 3315 | 0.69 | 0.742755 |
Target: 5'- cGCUGCGUCGAcgugagcgccgGGCAgcuCUGCGUGcUCgGCa -3' miRNA: 3'- -CGAUGCAGCU-----------CCGU---GGUGCAU-AGgUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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