miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23483 3' -53.3 NC_005259.1 + 66369 0.69 0.742755
Target:  5'- uCUGCG-CGuGGCacaGCCACGUGcCCAUg -3'
miRNA:   3'- cGAUGCaGCuCCG---UGGUGCAUaGGUG- -5'
23483 3' -53.3 NC_005259.1 + 52202 0.69 0.721763
Target:  5'- cGC-ACGgcucauGGGCACCGCGU-UCCGCg -3'
miRNA:   3'- -CGaUGCagc---UCCGUGGUGCAuAGGUG- -5'
23483 3' -53.3 NC_005259.1 + 35619 0.69 0.70042
Target:  5'- cGCUGCGUCGAguaguucgGGcCGCCGCcgcugCCGCu -3'
miRNA:   3'- -CGAUGCAGCU--------CC-GUGGUGcaua-GGUG- -5'
23483 3' -53.3 NC_005259.1 + 27834 0.69 0.70042
Target:  5'- uCUGCG-CGAGGUagGCCGCGagGUCgCGCg -3'
miRNA:   3'- cGAUGCaGCUCCG--UGGUGCa-UAG-GUG- -5'
23483 3' -53.3 NC_005259.1 + 50007 0.7 0.667938
Target:  5'- gGCUGCccUCGugcacGGGCGCUGCGUaAUCCGCu -3'
miRNA:   3'- -CGAUGc-AGC-----UCCGUGGUGCA-UAGGUG- -5'
23483 3' -53.3 NC_005259.1 + 4913 0.7 0.657031
Target:  5'- aGCUGCuUUGccguaGGGCACCGCGUgaucGUCCGg -3'
miRNA:   3'- -CGAUGcAGC-----UCCGUGGUGCA----UAGGUg -5'
23483 3' -53.3 NC_005259.1 + 53158 0.7 0.645006
Target:  5'- cGCUACGcCGAGGCcgaucucGCCACcg--CCGCc -3'
miRNA:   3'- -CGAUGCaGCUCCG-------UGGUGcauaGGUG- -5'
23483 3' -53.3 NC_005259.1 + 27505 0.71 0.591452
Target:  5'- --cGCGcCGAGGU-CgACGUGUCCGCa -3'
miRNA:   3'- cgaUGCaGCUCCGuGgUGCAUAGGUG- -5'
23483 3' -53.3 NC_005259.1 + 56583 0.72 0.569767
Target:  5'- gGCUGCGaUGA-GCGCCuCGUAUCCAa -3'
miRNA:   3'- -CGAUGCaGCUcCGUGGuGCAUAGGUg -5'
23483 3' -53.3 NC_005259.1 + 28799 0.72 0.548283
Target:  5'- cGCUACGccaUCGA--CACCACG-AUCCACg -3'
miRNA:   3'- -CGAUGC---AGCUccGUGGUGCaUAGGUG- -5'
23483 3' -53.3 NC_005259.1 + 62788 0.73 0.50615
Target:  5'- aGCUugGUCuuGaGCGCCGCGUcAUUCACc -3'
miRNA:   3'- -CGAugCAGcuC-CGUGGUGCA-UAGGUG- -5'
23483 3' -53.3 NC_005259.1 + 29361 0.74 0.455557
Target:  5'- cGC--CGUCGAGGCACC-CGUcgagGUCUACc -3'
miRNA:   3'- -CGauGCAGCUCCGUGGuGCA----UAGGUG- -5'
23483 3' -53.3 NC_005259.1 + 56094 0.83 0.131924
Target:  5'- uGCU-CGUCGGGGcCACCGCGUggCCACc -3'
miRNA:   3'- -CGAuGCAGCUCC-GUGGUGCAuaGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.