miRNA display CGI


Results 1 - 20 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23486 5' -58.4 NC_005259.1 + 22514 0.81 0.073552
Target:  5'- -gAUGACGUGCGCACCGuCGCCGGUGa -3'
miRNA:   3'- cgUGCUGCGUGUGUGGUcGCGGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 9611 0.79 0.102296
Target:  5'- aGCAcCGugGCAUcgaACACC-GCGCCGGUGc -3'
miRNA:   3'- -CGU-GCugCGUG---UGUGGuCGCGGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 45837 0.76 0.153109
Target:  5'- uGC-CGucCGCAC-CACCGGgGCCGGUGg -3'
miRNA:   3'- -CGuGCu-GCGUGuGUGGUCgCGGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 51556 0.76 0.157209
Target:  5'- uGCACGACGUugGgGCCaacgauccGGCaGCCGGUGc -3'
miRNA:   3'- -CGUGCUGCGugUgUGG--------UCG-CGGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 39310 0.76 0.174615
Target:  5'- uGCACGACGCcCGCugUcGCGCCgcuGGUGa -3'
miRNA:   3'- -CGUGCUGCGuGUGugGuCGCGG---CCAC- -5'
23486 5' -58.4 NC_005259.1 + 19087 0.75 0.179228
Target:  5'- cGCuACGACaagcuGCGCGaacuCACCGGCGCUGGUGu -3'
miRNA:   3'- -CG-UGCUG-----CGUGU----GUGGUCGCGGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 37061 0.75 0.182521
Target:  5'- cCACGGCGgcgguguccacgucCACGCACCGGCGgUGGUGu -3'
miRNA:   3'- cGUGCUGC--------------GUGUGUGGUCGCgGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 14742 0.75 0.188778
Target:  5'- -gAUGuACGCGCugGCCGG-GCCGGUGa -3'
miRNA:   3'- cgUGC-UGCGUGugUGGUCgCGGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 60470 0.75 0.188778
Target:  5'- cGCugGucucguAgGCACGCACCAgcgcccagcacGCGCCGGUGu -3'
miRNA:   3'- -CGugC------UgCGUGUGUGGU-----------CGCGGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 18435 0.73 0.268118
Target:  5'- cGCACGACGCcucgugcaacaccGCGCACac-CGCCGGUc -3'
miRNA:   3'- -CGUGCUGCG-------------UGUGUGgucGCGGCCAc -5'
23486 5' -58.4 NC_005259.1 + 45492 0.72 0.281531
Target:  5'- cGCugGugGCcuuggucgcugugGC-CACC-GCGCCGGUGu -3'
miRNA:   3'- -CGugCugCG-------------UGuGUGGuCGCGGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 52591 0.72 0.289132
Target:  5'- -aGCGuCGCcgaGCACCAGCGCCguacGGUGg -3'
miRNA:   3'- cgUGCuGCGug-UGUGGUCGCGG----CCAC- -5'
23486 5' -58.4 NC_005259.1 + 57303 0.72 0.296181
Target:  5'- uGCACGACaucgaGCAC-CGgCGGUGUCGGUGu -3'
miRNA:   3'- -CGUGCUG-----CGUGuGUgGUCGCGGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 17784 0.72 0.303362
Target:  5'- cGCACcgaGCGUGCGCACCgcgauAGCgagGCCGGUGa -3'
miRNA:   3'- -CGUGc--UGCGUGUGUGG-----UCG---CGGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 66246 0.72 0.310677
Target:  5'- aGCcauCGACGCAgCGCgGCCcGCGCCGGg- -3'
miRNA:   3'- -CGu--GCUGCGU-GUG-UGGuCGCGGCCac -5'
23486 5' -58.4 NC_005259.1 + 22669 0.72 0.310677
Target:  5'- cGC-CGACGCACugACCGcCGCCGa-- -3'
miRNA:   3'- -CGuGCUGCGUGugUGGUcGCGGCcac -5'
23486 5' -58.4 NC_005259.1 + 57455 0.72 0.310677
Target:  5'- gGUGCGACGC-UGCGgCAG-GCCGGUGg -3'
miRNA:   3'- -CGUGCUGCGuGUGUgGUCgCGGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 34156 0.72 0.310677
Target:  5'- aGguCGugGUGCccCACCAGUGCCGGa- -3'
miRNA:   3'- -CguGCugCGUGu-GUGGUCGCGGCCac -5'
23486 5' -58.4 NC_005259.1 + 45277 0.71 0.318126
Target:  5'- cGCcuCGAUGUACGCagacauguuuACC-GCGCCGGUGa -3'
miRNA:   3'- -CGu-GCUGCGUGUG----------UGGuCGCGGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 6443 0.71 0.325708
Target:  5'- gGCAcCGuCGCGCugAUCGGCagcgucGCCGGUGc -3'
miRNA:   3'- -CGU-GCuGCGUGugUGGUCG------CGGCCAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.