miRNA display CGI


Results 1 - 20 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23486 5' -58.4 NC_005259.1 + 720 0.67 0.534211
Target:  5'- gGCAUcGCGagaauCACACCGGCggugccuacgccGCCGGUGc -3'
miRNA:   3'- -CGUGcUGCgu---GUGUGGUCG------------CGGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 980 0.71 0.357366
Target:  5'- -gGCGACG-AgACACCGGCaGCCGuGUGg -3'
miRNA:   3'- cgUGCUGCgUgUGUGGUCG-CGGC-CAC- -5'
23486 5' -58.4 NC_005259.1 + 2147 0.66 0.617816
Target:  5'- cGCACG--GUGCugGCCAGCggcgucgagccGCCGGUu -3'
miRNA:   3'- -CGUGCugCGUGugUGGUCG-----------CGGCCAc -5'
23486 5' -58.4 NC_005259.1 + 3836 0.66 0.596689
Target:  5'- cCACGACGaugucccuCGCACCGucGaCGCCGGUc -3'
miRNA:   3'- cGUGCUGCgu------GUGUGGU--C-GCGGCCAc -5'
23486 5' -58.4 NC_005259.1 + 5670 0.67 0.522987
Target:  5'- cGCGCGAcaacaucgcccCGCACugccugcuguGCucgugccgccaagGCCAGCGCCGGa- -3'
miRNA:   3'- -CGUGCU-----------GCGUG----------UG-------------UGGUCGCGGCCac -5'
23486 5' -58.4 NC_005259.1 + 6443 0.71 0.325708
Target:  5'- gGCAcCGuCGCGCugAUCGGCagcgucGCCGGUGc -3'
miRNA:   3'- -CGU-GCuGCGUGugUGGUCG------CGGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 7235 0.69 0.43613
Target:  5'- -aACGACgGCAgcCGCGCCGGUGUCGaGUGc -3'
miRNA:   3'- cgUGCUG-CGU--GUGUGGUCGCGGC-CAC- -5'
23486 5' -58.4 NC_005259.1 + 8758 0.66 0.617816
Target:  5'- aGguCGAgGCccUugGCCAGCGCggCGGUGa -3'
miRNA:   3'- -CguGCUgCGu-GugUGGUCGCG--GCCAC- -5'
23486 5' -58.4 NC_005259.1 + 8800 0.67 0.524003
Target:  5'- cGCuuGGCGaggaucuucuCGCGCCGG-GCCGGUGa -3'
miRNA:   3'- -CGugCUGCgu--------GUGUGGUCgCGGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 8955 0.67 0.565225
Target:  5'- cGCGcCGugGaCGgGCACC-GUGCCGGg- -3'
miRNA:   3'- -CGU-GCugC-GUgUGUGGuCGCGGCCac -5'
23486 5' -58.4 NC_005259.1 + 9611 0.79 0.102296
Target:  5'- aGCAcCGugGCAUcgaACACC-GCGCCGGUGc -3'
miRNA:   3'- -CGU-GCugCGUG---UGUGGuCGCGGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 9832 0.66 0.595635
Target:  5'- gGUGCGGCGCugGCccaaucgacauugACCAGaCGCgGGa- -3'
miRNA:   3'- -CGUGCUGCGugUG-------------UGGUC-GCGgCCac -5'
23486 5' -58.4 NC_005259.1 + 12213 0.7 0.36561
Target:  5'- uGCAcCGGCGCAC-CGCCcGCugGCCGGg- -3'
miRNA:   3'- -CGU-GCUGCGUGuGUGGuCG--CGGCCac -5'
23486 5' -58.4 NC_005259.1 + 13115 0.69 0.43613
Target:  5'- cGCuCGGCGgcUACgACCAGCGCaCGGUGu -3'
miRNA:   3'- -CGuGCUGCguGUG-UGGUCGCG-GCCAC- -5'
23486 5' -58.4 NC_005259.1 + 13460 0.66 0.63899
Target:  5'- gGCGCGGCGCugGugcuCACC-GCGCUGc-- -3'
miRNA:   3'- -CGUGCUGCGugU----GUGGuCGCGGCcac -5'
23486 5' -58.4 NC_005259.1 + 14229 0.66 0.63899
Target:  5'- cGCGCGuCGUGCGUAUCGG-GCCGGg- -3'
miRNA:   3'- -CGUGCuGCGUGUGUGGUCgCGGCCac -5'
23486 5' -58.4 NC_005259.1 + 14742 0.75 0.188778
Target:  5'- -gAUGuACGCGCugGCCGG-GCCGGUGa -3'
miRNA:   3'- cgUGC-UGCGUGugUGGUCgCGGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 15204 0.67 0.565225
Target:  5'- cGCAUGAUGCugugGCGCuCGGCGCuCGGc- -3'
miRNA:   3'- -CGUGCUGCGug--UGUG-GUCGCG-GCCac -5'
23486 5' -58.4 NC_005259.1 + 15539 0.66 0.606186
Target:  5'- gGC-CGcCGuCACugGCCGGUGCCacccucaGGUGg -3'
miRNA:   3'- -CGuGCuGC-GUGugUGGUCGCGG-------CCAC- -5'
23486 5' -58.4 NC_005259.1 + 16790 0.66 0.628402
Target:  5'- gGguCGACGCGgucgcguacauCGCGCuCGGgGCCGGg- -3'
miRNA:   3'- -CguGCUGCGU-----------GUGUG-GUCgCGGCCac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.