miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23486 5' -58.4 NC_005259.1 + 17743 0.68 0.513872
Target:  5'- uGCuCGACGCgauccgugagGC-CGCCGcGCGCCGGg- -3'
miRNA:   3'- -CGuGCUGCG----------UGuGUGGU-CGCGGCCac -5'
23486 5' -58.4 NC_005259.1 + 17784 0.72 0.303362
Target:  5'- cGCACcgaGCGUGCGCACCgcgauAGCgagGCCGGUGa -3'
miRNA:   3'- -CGUGc--UGCGUGUGUGG-----UCG---CGGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 18435 0.73 0.268118
Target:  5'- cGCACGACGCcucgugcaacaccGCGCACac-CGCCGGUc -3'
miRNA:   3'- -CGUGCUGCG-------------UGUGUGgucGCGGCCAc -5'
23486 5' -58.4 NC_005259.1 + 19087 0.75 0.179228
Target:  5'- cGCuACGACaagcuGCGCGaacuCACCGGCGCUGGUGu -3'
miRNA:   3'- -CG-UGCUG-----CGUGU----GUGGUCGCGGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 20246 0.68 0.483982
Target:  5'- cGCACccugUGCgACACGCC-GCGCCGGg- -3'
miRNA:   3'- -CGUGcu--GCG-UGUGUGGuCGCGGCCac -5'
23486 5' -58.4 NC_005259.1 + 20682 0.67 0.554828
Target:  5'- -gAUGugGuCGCACGgCAcGCGCuCGGUGg -3'
miRNA:   3'- cgUGCugC-GUGUGUgGU-CGCG-GCCAC- -5'
23486 5' -58.4 NC_005259.1 + 22514 0.81 0.073552
Target:  5'- -gAUGACGUGCGCACCGuCGCCGGUGa -3'
miRNA:   3'- cgUGCUGCGUGUGUGGUcGCGGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 22669 0.72 0.310677
Target:  5'- cGC-CGACGCACugACCGcCGCCGa-- -3'
miRNA:   3'- -CGuGCUGCGUGugUGGUcGCGGCcac -5'
23486 5' -58.4 NC_005259.1 + 23686 0.68 0.513872
Target:  5'- aGCA-GGCGCACGCagacuACCGcgucgugaucGCGCCGGa- -3'
miRNA:   3'- -CGUgCUGCGUGUG-----UGGU----------CGCGGCCac -5'
23486 5' -58.4 NC_005259.1 + 25933 0.66 0.586163
Target:  5'- gGUcCGGugaGCGCACGCCGGUGcCCGGc- -3'
miRNA:   3'- -CGuGCUg--CGUGUGUGGUCGC-GGCCac -5'
23486 5' -58.4 NC_005259.1 + 26412 0.7 0.405193
Target:  5'- gGCGCGGCGgugccgccguagaACGCACCGccgagcgggcGgGCCGGUGg -3'
miRNA:   3'- -CGUGCUGCg------------UGUGUGGU----------CgCGGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 26587 0.66 0.607243
Target:  5'- uGCGCGAgGgGuuugccuugaucCACGCC-GCGCCGGa- -3'
miRNA:   3'- -CGUGCUgCgU------------GUGUGGuCGCGGCCac -5'
23486 5' -58.4 NC_005259.1 + 27449 0.66 0.63899
Target:  5'- cGCAUGAgcuCGuCGCGCgggaaauugggGCCGGgGUCGGUGu -3'
miRNA:   3'- -CGUGCU---GC-GUGUG-----------UGGUCgCGGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 29780 0.66 0.628402
Target:  5'- cCACGAgGCACcC-CCGGUGCCucGGUa -3'
miRNA:   3'- cGUGCUgCGUGuGuGGUCGCGG--CCAc -5'
23486 5' -58.4 NC_005259.1 + 30890 0.66 0.596689
Target:  5'- uCAUGACGCAaACGCgAgguGUGCCGGUu -3'
miRNA:   3'- cGUGCUGCGUgUGUGgU---CGCGGCCAc -5'
23486 5' -58.4 NC_005259.1 + 31246 0.67 0.544488
Target:  5'- gGCGCGGCGgugccgcccCACACGCCgcAGUaGgCGGUGg -3'
miRNA:   3'- -CGUGCUGC---------GUGUGUGG--UCG-CgGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 32267 0.68 0.474204
Target:  5'- uGCAuCGAUGgGCACGCCAuGaUGuuGGUGa -3'
miRNA:   3'- -CGU-GCUGCgUGUGUGGU-C-GCggCCAC- -5'
23486 5' -58.4 NC_005259.1 + 32639 0.68 0.503821
Target:  5'- gGUACGcCGCAUugGCCGGgGUgGGg- -3'
miRNA:   3'- -CGUGCuGCGUGugUGGUCgCGgCCac -5'
23486 5' -58.4 NC_005259.1 + 33903 0.68 0.503821
Target:  5'- cGCGCGACGgGCcgAgACCGGC-CaCGGUGc -3'
miRNA:   3'- -CGUGCUGCgUG--UgUGGUCGcG-GCCAC- -5'
23486 5' -58.4 NC_005259.1 + 34156 0.72 0.310677
Target:  5'- aGguCGugGUGCccCACCAGUGCCGGa- -3'
miRNA:   3'- -CguGCugCGUGu-GUGGUCGCGGCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.