miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23486 5' -58.4 NC_005259.1 + 68786 0.66 0.63899
Target:  5'- aGCAgGuCGUACGCcggGgCGGUGUCGGUGc -3'
miRNA:   3'- -CGUgCuGCGUGUG---UgGUCGCGGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 67339 0.69 0.426889
Target:  5'- aGCGCGuaccACGUACGCucGCCGaccucGCGCCGGa- -3'
miRNA:   3'- -CGUGC----UGCGUGUG--UGGU-----CGCGGCCac -5'
23486 5' -58.4 NC_005259.1 + 66371 0.7 0.373985
Target:  5'- uGCGCGugGCACA-GCCAcGUGCCcauGUGg -3'
miRNA:   3'- -CGUGCugCGUGUgUGGU-CGCGGc--CAC- -5'
23486 5' -58.4 NC_005259.1 + 66246 0.72 0.310677
Target:  5'- aGCcauCGACGCAgCGCgGCCcGCGCCGGg- -3'
miRNA:   3'- -CGu--GCUGCGU-GUG-UGGuCGCGGCCac -5'
23486 5' -58.4 NC_005259.1 + 66167 0.67 0.534211
Target:  5'- uGUGCG-CGCAUgcucaucgGCACCGcUGCCGGUGc -3'
miRNA:   3'- -CGUGCuGCGUG--------UGUGGUcGCGGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 66005 0.66 0.63899
Target:  5'- -gACGugGUGCGCACCcucGGgGCCGcacGUGu -3'
miRNA:   3'- cgUGCugCGUGUGUGG---UCgCGGC---CAC- -5'
23486 5' -58.4 NC_005259.1 + 60668 0.66 0.637931
Target:  5'- cCAUGACGCACgcguucuGCACCgAGCGgUGGc- -3'
miRNA:   3'- cGUGCUGCGUG-------UGUGG-UCGCgGCCac -5'
23486 5' -58.4 NC_005259.1 + 60470 0.75 0.188778
Target:  5'- cGCugGucucguAgGCACGCACCAgcgcccagcacGCGCCGGUGu -3'
miRNA:   3'- -CGugC------UgCGUGUGUGGU-----------CGCGGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 60243 0.66 0.614643
Target:  5'- gGCACGcuuGCGUGCGggugcaaggcuggcCACCAGCgcuGCCGGg- -3'
miRNA:   3'- -CGUGC---UGCGUGU--------------GUGGUCG---CGGCCac -5'
23486 5' -58.4 NC_005259.1 + 58767 0.69 0.43613
Target:  5'- -aACGACGCuGCggGCGCUGuGCGCCGGUc -3'
miRNA:   3'- cgUGCUGCG-UG--UGUGGU-CGCGGCCAc -5'
23486 5' -58.4 NC_005259.1 + 58385 0.67 0.575673
Target:  5'- uGCucCGACgGUGCGCACCAGCcaCCGGc- -3'
miRNA:   3'- -CGu-GCUG-CGUGUGUGGUCGc-GGCCac -5'
23486 5' -58.4 NC_005259.1 + 58170 0.66 0.595635
Target:  5'- cGCAcgggaucuCGACGCACGucuugacCGCCgugGGCuuGCCGGUGu -3'
miRNA:   3'- -CGU--------GCUGCGUGU-------GUGG---UCG--CGGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 57455 0.72 0.310677
Target:  5'- gGUGCGACGC-UGCGgCAG-GCCGGUGg -3'
miRNA:   3'- -CGUGCUGCGuGUGUgGUCgCGGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 57303 0.72 0.296181
Target:  5'- uGCACGACaucgaGCAC-CGgCGGUGUCGGUGu -3'
miRNA:   3'- -CGUGCUG-----CGUGuGUgGUCGCGGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 56901 0.67 0.554828
Target:  5'- cGCAgCGugGC-CGCcgcagcaggcguGCCcGCGUCGGUGa -3'
miRNA:   3'- -CGU-GCugCGuGUG------------UGGuCGCGGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 52591 0.72 0.289132
Target:  5'- -aGCGuCGCcgaGCACCAGCGCCguacGGUGg -3'
miRNA:   3'- cgUGCuGCGug-UGUGGUCGCGG----CCAC- -5'
23486 5' -58.4 NC_005259.1 + 51556 0.76 0.157209
Target:  5'- uGCACGACGUugGgGCCaacgauccGGCaGCCGGUGc -3'
miRNA:   3'- -CGUGCUGCGugUgUGG--------UCG-CGGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 50390 0.69 0.464526
Target:  5'- cCACGuguCGCgGCuCGCCGagcGCGCCGGUGc -3'
miRNA:   3'- cGUGCu--GCG-UGuGUGGU---CGCGGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 49540 0.69 0.454952
Target:  5'- -aACGugGC-CACcUCAGUGCCGGg- -3'
miRNA:   3'- cgUGCugCGuGUGuGGUCGCGGCCac -5'
23486 5' -58.4 NC_005259.1 + 48448 0.71 0.341272
Target:  5'- gGCAgCGGCaGCGCGuucCACCGcGCGCCGGg- -3'
miRNA:   3'- -CGU-GCUG-CGUGU---GUGGU-CGCGGCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.