miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23486 5' -58.4 NC_005259.1 + 32639 0.68 0.503821
Target:  5'- gGUACGcCGCAUugGCCGGgGUgGGg- -3'
miRNA:   3'- -CGUGCuGCGUGugUGGUCgCGgCCac -5'
23486 5' -58.4 NC_005259.1 + 33903 0.68 0.503821
Target:  5'- cGCGCGACGgGCcgAgACCGGC-CaCGGUGc -3'
miRNA:   3'- -CGUGCUGCgUG--UgUGGUCGcG-GCCAC- -5'
23486 5' -58.4 NC_005259.1 + 41706 0.68 0.493856
Target:  5'- gGCAUGcagcCGcCGCAUACCGGCGgCGGg- -3'
miRNA:   3'- -CGUGCu---GC-GUGUGUGGUCGCgGCCac -5'
23486 5' -58.4 NC_005259.1 + 35257 0.68 0.483982
Target:  5'- uCGCGuuguuCGCGCcCGCC-GCGCCGGg- -3'
miRNA:   3'- cGUGCu----GCGUGuGUGGuCGCGGCCac -5'
23486 5' -58.4 NC_005259.1 + 20246 0.68 0.483982
Target:  5'- cGCACccugUGCgACACGCC-GCGCCGGg- -3'
miRNA:   3'- -CGUGcu--GCG-UGUGUGGuCGCGGCCac -5'
23486 5' -58.4 NC_005259.1 + 43656 0.68 0.475177
Target:  5'- uGCGcCGACGgugucguugccgauCACACCGcCGCCGGUGg -3'
miRNA:   3'- -CGU-GCUGCgu------------GUGUGGUcGCGGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 32267 0.68 0.474204
Target:  5'- uGCAuCGAUGgGCACGCCAuGaUGuuGGUGa -3'
miRNA:   3'- -CGU-GCUGCgUGUGUGGU-C-GCggCCAC- -5'
23486 5' -58.4 NC_005259.1 + 50390 0.69 0.464526
Target:  5'- cCACGuguCGCgGCuCGCCGagcGCGCCGGUGc -3'
miRNA:   3'- cGUGCu--GCG-UGuGUGGU---CGCGGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 49540 0.69 0.454952
Target:  5'- -aACGugGC-CACcUCAGUGCCGGg- -3'
miRNA:   3'- cgUGCugCGuGUGuGGUCGCGGCCac -5'
23486 5' -58.4 NC_005259.1 + 36872 0.69 0.454952
Target:  5'- uGCugGcacCGCcCGCGCCGacGaCGCCGGUGa -3'
miRNA:   3'- -CGugCu--GCGuGUGUGGU--C-GCGGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 58767 0.69 0.43613
Target:  5'- -aACGACGCuGCggGCGCUGuGCGCCGGUc -3'
miRNA:   3'- cgUGCUGCG-UG--UGUGGU-CGCGGCCAc -5'
23486 5' -58.4 NC_005259.1 + 13115 0.69 0.43613
Target:  5'- cGCuCGGCGgcUACgACCAGCGCaCGGUGu -3'
miRNA:   3'- -CGuGCUGCguGUG-UGGUCGCG-GCCAC- -5'
23486 5' -58.4 NC_005259.1 + 7235 0.69 0.43613
Target:  5'- -aACGACgGCAgcCGCGCCGGUGUCGaGUGc -3'
miRNA:   3'- cgUGCUG-CGU--GUGUGGUCGCGGC-CAC- -5'
23486 5' -58.4 NC_005259.1 + 67339 0.69 0.426889
Target:  5'- aGCGCGuaccACGUACGCucGCCGaccucGCGCCGGa- -3'
miRNA:   3'- -CGUGC----UGCGUGUG--UGGU-----CGCGGCCac -5'
23486 5' -58.4 NC_005259.1 + 26412 0.7 0.405193
Target:  5'- gGCGCGGCGgugccgccguagaACGCACCGccgagcgggcGgGCCGGUGg -3'
miRNA:   3'- -CGUGCUGCg------------UGUGUGGU----------CgCGGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 44156 0.7 0.391121
Target:  5'- cGUGCGGuCGagcaGCGCGCCGGUGUCGGa- -3'
miRNA:   3'- -CGUGCU-GCg---UGUGUGGUCGCGGCCac -5'
23486 5' -58.4 NC_005259.1 + 66371 0.7 0.373985
Target:  5'- uGCGCGugGCACA-GCCAcGUGCCcauGUGg -3'
miRNA:   3'- -CGUGCugCGUGUgUGGU-CGCGGc--CAC- -5'
23486 5' -58.4 NC_005259.1 + 12213 0.7 0.36561
Target:  5'- uGCAcCGGCGCAC-CGCCcGCugGCCGGg- -3'
miRNA:   3'- -CGU-GCUGCGUGuGUGGuCG--CGGCCac -5'
23486 5' -58.4 NC_005259.1 + 980 0.71 0.357366
Target:  5'- -gGCGACG-AgACACCGGCaGCCGuGUGg -3'
miRNA:   3'- cgUGCUGCgUgUGUGGUCG-CGGC-CAC- -5'
23486 5' -58.4 NC_005259.1 + 48448 0.71 0.341272
Target:  5'- gGCAgCGGCaGCGCGuucCACCGcGCGCCGGg- -3'
miRNA:   3'- -CGU-GCUG-CGUGU---GUGGU-CGCGGCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.