miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23486 5' -58.4 NC_005259.1 + 9832 0.66 0.595635
Target:  5'- gGUGCGGCGCugGCccaaucgacauugACCAGaCGCgGGa- -3'
miRNA:   3'- -CGUGCUGCGugUG-------------UGGUC-GCGgCCac -5'
23486 5' -58.4 NC_005259.1 + 25933 0.66 0.586163
Target:  5'- gGUcCGGugaGCGCACGCCGGUGcCCGGc- -3'
miRNA:   3'- -CGuGCUg--CGUGUGUGGUCGC-GGCCac -5'
23486 5' -58.4 NC_005259.1 + 43248 0.66 0.586163
Target:  5'- -gACGAUGC-CGC-CC-GCGCCGGg- -3'
miRNA:   3'- cgUGCUGCGuGUGuGGuCGCGGCCac -5'
23486 5' -58.4 NC_005259.1 + 58385 0.67 0.575673
Target:  5'- uGCucCGACgGUGCGCACCAGCcaCCGGc- -3'
miRNA:   3'- -CGu-GCUG-CGUGUGUGGUCGc-GGCCac -5'
23486 5' -58.4 NC_005259.1 + 40081 0.67 0.575673
Target:  5'- gGC-CGACGCGCAC-CgAGCG-CGGa- -3'
miRNA:   3'- -CGuGCUGCGUGUGuGgUCGCgGCCac -5'
23486 5' -58.4 NC_005259.1 + 45611 0.67 0.569399
Target:  5'- aGCucggucuCGAUGCccgccgggccgggcaGCGCGCCGGUGCCGccGUGa -3'
miRNA:   3'- -CGu------GCUGCG---------------UGUGUGGUCGCGGC--CAC- -5'
23486 5' -58.4 NC_005259.1 + 15204 0.67 0.565225
Target:  5'- cGCAUGAUGCugugGCGCuCGGCGCuCGGc- -3'
miRNA:   3'- -CGUGCUGCGug--UGUG-GUCGCG-GCCac -5'
23486 5' -58.4 NC_005259.1 + 8955 0.67 0.565225
Target:  5'- cGCGcCGugGaCGgGCACC-GUGCCGGg- -3'
miRNA:   3'- -CGU-GCugC-GUgUGUGGuCGCGGCCac -5'
23486 5' -58.4 NC_005259.1 + 56901 0.67 0.554828
Target:  5'- cGCAgCGugGC-CGCcgcagcaggcguGCCcGCGUCGGUGa -3'
miRNA:   3'- -CGU-GCugCGuGUG------------UGGuCGCGGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 20682 0.67 0.554828
Target:  5'- -gAUGugGuCGCACGgCAcGCGCuCGGUGg -3'
miRNA:   3'- cgUGCugC-GUGUGUgGU-CGCG-GCCAC- -5'
23486 5' -58.4 NC_005259.1 + 40820 0.67 0.554828
Target:  5'- gGguCGACGCGCACGau-GgGCCGcGUGu -3'
miRNA:   3'- -CguGCUGCGUGUGUgguCgCGGC-CAC- -5'
23486 5' -58.4 NC_005259.1 + 37646 0.67 0.544488
Target:  5'- -gAUGAcCGCACcgcCGCCGcCGCCGGUGc -3'
miRNA:   3'- cgUGCU-GCGUGu--GUGGUcGCGGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 36242 0.67 0.544488
Target:  5'- aGCGCGA-GCGCcugcgucggcaGCGCCA-CGCCGGa- -3'
miRNA:   3'- -CGUGCUgCGUG-----------UGUGGUcGCGGCCac -5'
23486 5' -58.4 NC_005259.1 + 31246 0.67 0.544488
Target:  5'- gGCGCGGCGgugccgcccCACACGCCgcAGUaGgCGGUGg -3'
miRNA:   3'- -CGUGCUGC---------GUGUGUGG--UCG-CgGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 66167 0.67 0.534211
Target:  5'- uGUGCG-CGCAUgcucaucgGCACCGcUGCCGGUGc -3'
miRNA:   3'- -CGUGCuGCGUG--------UGUGGUcGCGGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 720 0.67 0.534211
Target:  5'- gGCAUcGCGagaauCACACCGGCggugccuacgccGCCGGUGc -3'
miRNA:   3'- -CGUGcUGCgu---GUGUGGUCG------------CGGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 8800 0.67 0.524003
Target:  5'- cGCuuGGCGaggaucuucuCGCGCCGG-GCCGGUGa -3'
miRNA:   3'- -CGugCUGCgu--------GUGUGGUCgCGGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 5670 0.67 0.522987
Target:  5'- cGCGCGAcaacaucgcccCGCACugccugcuguGCucgugccgccaagGCCAGCGCCGGa- -3'
miRNA:   3'- -CGUGCU-----------GCGUG----------UG-------------UGGUCGCGGCCac -5'
23486 5' -58.4 NC_005259.1 + 17743 0.68 0.513872
Target:  5'- uGCuCGACGCgauccgugagGC-CGCCGcGCGCCGGg- -3'
miRNA:   3'- -CGuGCUGCG----------UGuGUGGU-CGCGGCCac -5'
23486 5' -58.4 NC_005259.1 + 23686 0.68 0.513872
Target:  5'- aGCA-GGCGCACGCagacuACCGcgucgugaucGCGCCGGa- -3'
miRNA:   3'- -CGUgCUGCGUGUG-----UGGU----------CGCGGCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.