miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23487 3' -56.4 NC_005259.1 + 8949 0.68 0.651442
Target:  5'- -gGugGGCGcgcCGUgGACgGGCACcguGCCg -3'
miRNA:   3'- agCugCCGCu--GCAaCUGgCCGUG---UGG- -5'
23487 3' -56.4 NC_005259.1 + 44559 0.68 0.651442
Target:  5'- cCGGCaGGCaGCGcgccGACCGGCAgGCUc -3'
miRNA:   3'- aGCUG-CCGcUGCaa--CUGGCCGUgUGG- -5'
23487 3' -56.4 NC_005259.1 + 57534 0.68 0.651442
Target:  5'- cCGACGGCGAUGgcGuccUCGGUgaACAUCc -3'
miRNA:   3'- aGCUGCCGCUGCaaCu--GGCCG--UGUGG- -5'
23487 3' -56.4 NC_005259.1 + 54509 0.68 0.6451
Target:  5'- aUGGCGGCGAUGUggGGuggcgggucgaguauCCGGCccaGCCa -3'
miRNA:   3'- aGCUGCCGCUGCAa-CU---------------GGCCGug-UGG- -5'
23487 3' -56.4 NC_005259.1 + 67044 0.68 0.6451
Target:  5'- cUCGACGGCGAgcaccCGUgcgccgaucucaagGGCCaGCgugACGCCg -3'
miRNA:   3'- -AGCUGCCGCU-----GCAa-------------CUGGcCG---UGUGG- -5'
23487 3' -56.4 NC_005259.1 + 60822 0.68 0.640869
Target:  5'- aUCGuCGGCGAU----GCUGGC-CACCa -3'
miRNA:   3'- -AGCuGCCGCUGcaacUGGCCGuGUGG- -5'
23487 3' -56.4 NC_005259.1 + 57458 0.68 0.640869
Target:  5'- gCGACGcuGCGGCa--GGCCGGUgGCACCg -3'
miRNA:   3'- aGCUGC--CGCUGcaaCUGGCCG-UGUGG- -5'
23487 3' -56.4 NC_005259.1 + 11119 0.68 0.640869
Target:  5'- gCGACGGUGACG--GugCGaGCcguCGCCu -3'
miRNA:   3'- aGCUGCCGCUGCaaCugGC-CGu--GUGG- -5'
23487 3' -56.4 NC_005259.1 + 26983 0.68 0.640869
Target:  5'- cUCGGCGGUguaGACGUUcGACguuuCGGUcuugaACGCCg -3'
miRNA:   3'- -AGCUGCCG---CUGCAA-CUG----GCCG-----UGUGG- -5'
23487 3' -56.4 NC_005259.1 + 57267 0.68 0.661999
Target:  5'- cCGuugGGCGAgGgauUGACCGGUGgCACCu -3'
miRNA:   3'- aGCug-CCGCUgCa--ACUGGCCGU-GUGG- -5'
23487 3' -56.4 NC_005259.1 + 32245 0.68 0.661999
Target:  5'- cUCGAUGaGauccaacaCGACGUgcaucGAUgGGCACGCCa -3'
miRNA:   3'- -AGCUGC-C--------GCUGCAa----CUGgCCGUGUGG- -5'
23487 3' -56.4 NC_005259.1 + 11295 0.68 0.634521
Target:  5'- -gGACGGuCGACGggcgugaggccgaGACgGGCGCGCa -3'
miRNA:   3'- agCUGCC-GCUGCaa-----------CUGgCCGUGUGg -5'
23487 3' -56.4 NC_005259.1 + 36930 0.68 0.661999
Target:  5'- cCGACGGUGAgUGUUGcugucACCGGggUGCCc -3'
miRNA:   3'- aGCUGCCGCU-GCAAC-----UGGCCguGUGG- -5'
23487 3' -56.4 NC_005259.1 + 38741 0.68 0.661999
Target:  5'- cCGGCGGUGGCccgccgcaGGCCGGUgaGCugCg -3'
miRNA:   3'- aGCUGCCGCUGcaa-----CUGGCCG--UGugG- -5'
23487 3' -56.4 NC_005259.1 + 20653 0.69 0.59859
Target:  5'- uUCGGCGGC-ACcggGGCCGaGgACGCCa -3'
miRNA:   3'- -AGCUGCCGcUGcaaCUGGC-CgUGUGG- -5'
23487 3' -56.4 NC_005259.1 + 66144 0.69 0.577576
Target:  5'- -aGACGGCGuGCGUUGGCauccugUGuGCGCGCa -3'
miRNA:   3'- agCUGCCGC-UGCAACUG------GC-CGUGUGg -5'
23487 3' -56.4 NC_005259.1 + 64612 0.69 0.577576
Target:  5'- cUGACGGCGAgCGc-GACgGGCagcaGCGCCc -3'
miRNA:   3'- aGCUGCCGCU-GCaaCUGgCCG----UGUGG- -5'
23487 3' -56.4 NC_005259.1 + 49566 0.69 0.588066
Target:  5'- uUCGuCGGuCGugGccaGACCGGCgggcggggucaGCACCu -3'
miRNA:   3'- -AGCuGCC-GCugCaa-CUGGCCG-----------UGUGG- -5'
23487 3' -56.4 NC_005259.1 + 19217 0.69 0.597536
Target:  5'- -gGGCGGCGACGUggGACaccgaguCGGCGaugaucgauggcCGCCu -3'
miRNA:   3'- agCUGCCGCUGCAa-CUG-------GCCGU------------GUGG- -5'
23487 3' -56.4 NC_005259.1 + 12181 0.69 0.59859
Target:  5'- gUCGAaccugcCGGacCGugGUcguguagagaUGcACCGGCGCACCg -3'
miRNA:   3'- -AGCU------GCC--GCugCA----------AC-UGGCCGUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.