miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23487 3' -56.4 NC_005259.1 + 13230 0.67 0.714205
Target:  5'- cUCGAcCGGCcacCGUgagGGCCGaGCAC-CCg -3'
miRNA:   3'- -AGCU-GCCGcu-GCAa--CUGGC-CGUGuGG- -5'
23487 3' -56.4 NC_005259.1 + 24187 0.67 0.724462
Target:  5'- -gGugGGCGAgaucGACCGGguCAUCg -3'
miRNA:   3'- agCugCCGCUgcaaCUGGCCguGUGG- -5'
23487 3' -56.4 NC_005259.1 + 43728 0.67 0.72344
Target:  5'- gUCGAUGGCGGCcaUGccgccgaGCCGGgcaACAUCg -3'
miRNA:   3'- -AGCUGCCGCUGcaAC-------UGGCCg--UGUGG- -5'
23487 3' -56.4 NC_005259.1 + 41193 0.67 0.703873
Target:  5'- aUCGAUGGUGAugcCGUUG-UCGGUguggaucgucACGCCc -3'
miRNA:   3'- -AGCUGCCGCU---GCAACuGGCCG----------UGUGG- -5'
23487 3' -56.4 NC_005259.1 + 47250 0.67 0.703873
Target:  5'- gUCGAccagcgcuCGGUGACGcguuCCaGCGCACCg -3'
miRNA:   3'- -AGCU--------GCCGCUGCaacuGGcCGUGUGG- -5'
23487 3' -56.4 NC_005259.1 + 65206 0.67 0.703873
Target:  5'- -gGugGGUauucGAUGaUGACCGGcCugACCu -3'
miRNA:   3'- agCugCCG----CUGCaACUGGCC-GugUGG- -5'
23487 3' -56.4 NC_005259.1 + 159 0.67 0.714205
Target:  5'- cUCGccCGGCGGgGU---CCGGCACcACCg -3'
miRNA:   3'- -AGCu-GCCGCUgCAacuGGCCGUG-UGG- -5'
23487 3' -56.4 NC_005259.1 + 60649 0.67 0.714205
Target:  5'- uUCGACGGUGAUuucggGGCCaugacGCACGCg -3'
miRNA:   3'- -AGCUGCCGCUGcaa--CUGGc----CGUGUGg -5'
23487 3' -56.4 NC_005259.1 + 36080 0.67 0.703873
Target:  5'- cUCGucGCGGUGcUGUUGAgCGacaGCACGCCc -3'
miRNA:   3'- -AGC--UGCCGCuGCAACUgGC---CGUGUGG- -5'
23487 3' -56.4 NC_005259.1 + 32245 0.68 0.661999
Target:  5'- cUCGAUGaGauccaacaCGACGUgcaucGAUgGGCACGCCa -3'
miRNA:   3'- -AGCUGC-C--------GCUGCAa----CUGgCCGUGUGG- -5'
23487 3' -56.4 NC_005259.1 + 11119 0.68 0.640869
Target:  5'- gCGACGGUGACG--GugCGaGCcguCGCCu -3'
miRNA:   3'- aGCUGCCGCUGCaaCugGC-CGu--GUGG- -5'
23487 3' -56.4 NC_005259.1 + 57458 0.68 0.640869
Target:  5'- gCGACGcuGCGGCa--GGCCGGUgGCACCg -3'
miRNA:   3'- aGCUGC--CGCUGcaaCUGGCCG-UGUGG- -5'
23487 3' -56.4 NC_005259.1 + 11775 0.68 0.60914
Target:  5'- cUCGACGGCGAgGgaGuCCcacacaucgGGCGCgACCc -3'
miRNA:   3'- -AGCUGCCGCUgCaaCuGG---------CCGUG-UGG- -5'
23487 3' -56.4 NC_005259.1 + 8949 0.68 0.651442
Target:  5'- -gGugGGCGcgcCGUgGACgGGCACcguGCCg -3'
miRNA:   3'- agCugCCGCu--GCAaCUGgCCGUG---UGG- -5'
23487 3' -56.4 NC_005259.1 + 57534 0.68 0.651442
Target:  5'- cCGACGGCGAUGgcGuccUCGGUgaACAUCc -3'
miRNA:   3'- aGCUGCCGCUGCaaCu--GGCCG--UGUGG- -5'
23487 3' -56.4 NC_005259.1 + 44559 0.68 0.651442
Target:  5'- cCGGCaGGCaGCGcgccGACCGGCAgGCUc -3'
miRNA:   3'- aGCUG-CCGcUGCaa--CUGGCCGUgUGG- -5'
23487 3' -56.4 NC_005259.1 + 41852 0.68 0.607029
Target:  5'- cUCGACGGUGucccacucGACgGGCAgCACCg -3'
miRNA:   3'- -AGCUGCCGCugcaa---CUGgCCGU-GUGG- -5'
23487 3' -56.4 NC_005259.1 + 54509 0.68 0.6451
Target:  5'- aUGGCGGCGAUGUggGGuggcgggucgaguauCCGGCccaGCCa -3'
miRNA:   3'- aGCUGCCGCUGCAa-CU---------------GGCCGug-UGG- -5'
23487 3' -56.4 NC_005259.1 + 57267 0.68 0.661999
Target:  5'- cCGuugGGCGAgGgauUGACCGGUGgCACCu -3'
miRNA:   3'- aGCug-CCGCUgCa--ACUGGCCGU-GUGG- -5'
23487 3' -56.4 NC_005259.1 + 51101 0.68 0.60914
Target:  5'- aCGAgGGCGGgaucUGuCCGGCAgGCCa -3'
miRNA:   3'- aGCUgCCGCUgca-ACuGGCCGUgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.