miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23487 3' -56.4 NC_005259.1 + 13780 0.81 0.111684
Target:  5'- uUCGACGGCGACGagcagUGgugcgacaucACCGGCgaGCACCa -3'
miRNA:   3'- -AGCUGCCGCUGCa----AC----------UGGCCG--UGUGG- -5'
23487 3' -56.4 NC_005259.1 + 14054 0.73 0.350852
Target:  5'- aUCGuCGGCGACGa-GACCaGCACGgCg -3'
miRNA:   3'- -AGCuGCCGCUGCaaCUGGcCGUGUgG- -5'
23487 3' -56.4 NC_005259.1 + 14556 0.75 0.276813
Target:  5'- cCGGCaGGCcgaGCGggGACCGGCgaACACCa -3'
miRNA:   3'- aGCUG-CCGc--UGCaaCUGGCCG--UGUGG- -5'
23487 3' -56.4 NC_005259.1 + 14650 0.7 0.522838
Target:  5'- aCGAUGGCGugGgcucagcccgacucgGGCCGcGUGCACUc -3'
miRNA:   3'- aGCUGCCGCugCaa-------------CUGGC-CGUGUGG- -5'
23487 3' -56.4 NC_005259.1 + 15664 0.72 0.401594
Target:  5'- aCGACGGCGACGgucucaccucgaUUGACUGGUcucagaucgaGCCg -3'
miRNA:   3'- aGCUGCCGCUGC------------AACUGGCCGug--------UGG- -5'
23487 3' -56.4 NC_005259.1 + 17501 0.68 0.605973
Target:  5'- -gGACGGCGACcUUG-CCgauccgagcucgugGGCACACa -3'
miRNA:   3'- agCUGCCGCUGcAACuGG--------------CCGUGUGg -5'
23487 3' -56.4 NC_005259.1 + 17745 0.68 0.61971
Target:  5'- cUCGAC-GCGAucCGUgaGGCCGccGCGCGCCg -3'
miRNA:   3'- -AGCUGcCGCU--GCAa-CUGGC--CGUGUGG- -5'
23487 3' -56.4 NC_005259.1 + 18347 0.71 0.46635
Target:  5'- gUCGACGcCGACGgcGACauguGGCACAUg -3'
miRNA:   3'- -AGCUGCcGCUGCaaCUGg---CCGUGUGg -5'
23487 3' -56.4 NC_005259.1 + 19217 0.69 0.597536
Target:  5'- -gGGCGGCGACGUggGACaccgaguCGGCGaugaucgauggcCGCCu -3'
miRNA:   3'- agCUGCCGCUGCAa-CUG-------GCCGU------------GUGG- -5'
23487 3' -56.4 NC_005259.1 + 19732 0.66 0.76747
Target:  5'- aUCGACGGgGACuaGUUGACUuacccgacacaugcgGGUAaguucauCACCa -3'
miRNA:   3'- -AGCUGCCgCUG--CAACUGG---------------CCGU-------GUGG- -5'
23487 3' -56.4 NC_005259.1 + 20588 0.66 0.74471
Target:  5'- aCGAcCGGUGGaagucgGACuaugCGGCGCACCg -3'
miRNA:   3'- aGCU-GCCGCUgcaa--CUG----GCCGUGUGG- -5'
23487 3' -56.4 NC_005259.1 + 20653 0.69 0.59859
Target:  5'- uUCGGCGGC-ACcggGGCCGaGgACGCCa -3'
miRNA:   3'- -AGCUGCCGcUGcaaCUGGC-CgUGUGG- -5'
23487 3' -56.4 NC_005259.1 + 21008 0.78 0.184984
Target:  5'- -gGGCGGCGACccUGACCGGCAgcugACCg -3'
miRNA:   3'- agCUGCCGCUGcaACUGGCCGUg---UGG- -5'
23487 3' -56.4 NC_005259.1 + 22196 0.74 0.33498
Target:  5'- gCGACcuuGCaGACGUUGGCCaccGCGCACCg -3'
miRNA:   3'- aGCUGc--CG-CUGCAACUGGc--CGUGUGG- -5'
23487 3' -56.4 NC_005259.1 + 22827 0.66 0.74471
Target:  5'- gUGACuGCGuCGUgcUGGcCCGGCcCACCc -3'
miRNA:   3'- aGCUGcCGCuGCA--ACU-GGCCGuGUGG- -5'
23487 3' -56.4 NC_005259.1 + 23656 0.81 0.123419
Target:  5'- cCGACGGCGACGgcugGACCgccgaccccgagcaGGCGCACg -3'
miRNA:   3'- aGCUGCCGCUGCaa--CUGG--------------CCGUGUGg -5'
23487 3' -56.4 NC_005259.1 + 23744 0.66 0.764537
Target:  5'- -gGACGGCGAccccgacgcccCGcaGACCGGC-C-CCa -3'
miRNA:   3'- agCUGCCGCU-----------GCaaCUGGCCGuGuGG- -5'
23487 3' -56.4 NC_005259.1 + 23838 0.69 0.596483
Target:  5'- aUCGAugagaaUGGCGAUuucuacccCCGGCACACCg -3'
miRNA:   3'- -AGCU------GCCGCUGcaacu---GGCCGUGUGG- -5'
23487 3' -56.4 NC_005259.1 + 24187 0.67 0.724462
Target:  5'- -gGugGGCGAgaucGACCGGguCAUCg -3'
miRNA:   3'- agCugCCGCUgcaaCUGGCCguGUGG- -5'
23487 3' -56.4 NC_005259.1 + 25965 0.69 0.567127
Target:  5'- cCGACGccuGCGAUGa-GACCGGgcaGCGCCg -3'
miRNA:   3'- aGCUGC---CGCUGCaaCUGGCCg--UGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.