miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23487 3' -56.4 NC_005259.1 + 26636 0.72 0.401594
Target:  5'- aUCGAUGGCcuGGCGUgcgcucggcagGuuCGGCGCACCc -3'
miRNA:   3'- -AGCUGCCG--CUGCAa----------CugGCCGUGUGG- -5'
23487 3' -56.4 NC_005259.1 + 15664 0.72 0.401594
Target:  5'- aCGACGGCGACGgucucaccucgaUUGACUGGUcucagaucgaGCCg -3'
miRNA:   3'- aGCUGCCGCUGC------------AACUGGCCGug--------UGG- -5'
23487 3' -56.4 NC_005259.1 + 61032 0.72 0.418607
Target:  5'- gUGGCGGCGAgGUcGACCgacgggcGGCuCACCu -3'
miRNA:   3'- aGCUGCCGCUgCAaCUGG-------CCGuGUGG- -5'
23487 3' -56.4 NC_005259.1 + 63639 0.72 0.419515
Target:  5'- aUCG-UGGCGAgcugcuCGcUGGCCGGgACGCCg -3'
miRNA:   3'- -AGCuGCCGCU------GCaACUGGCCgUGUGG- -5'
23487 3' -56.4 NC_005259.1 + 6312 0.72 0.428655
Target:  5'- gUCGACGGCauGACcuaccUUGcCgGGCACACCc -3'
miRNA:   3'- -AGCUGCCG--CUGc----AACuGgCCGUGUGG- -5'
23487 3' -56.4 NC_005259.1 + 30934 0.71 0.447282
Target:  5'- aUCGGaaugagcaucuUGGCGAUGUc-GCCGaGCACACCg -3'
miRNA:   3'- -AGCU-----------GCCGCUGCAacUGGC-CGUGUGG- -5'
23487 3' -56.4 NC_005259.1 + 54200 0.71 0.447282
Target:  5'- -aGGCGGCGGCccUUGACgGGCuggAUACCg -3'
miRNA:   3'- agCUGCCGCUGc-AACUGgCCG---UGUGG- -5'
23487 3' -56.4 NC_005259.1 + 43197 0.71 0.447282
Target:  5'- cUCGGCGGCGAUGUcGAcgcCCGcCugACCc -3'
miRNA:   3'- -AGCUGCCGCUGCAaCU---GGCcGugUGG- -5'
23487 3' -56.4 NC_005259.1 + 8369 0.71 0.447282
Target:  5'- cUCGGCGGCGGCcucgGcAUCGGCGagaGCCu -3'
miRNA:   3'- -AGCUGCCGCUGcaa-C-UGGCCGUg--UGG- -5'
23487 3' -56.4 NC_005259.1 + 35215 0.71 0.46635
Target:  5'- -aGGCGGCGAgGaacgUGACCGcCACGCg -3'
miRNA:   3'- agCUGCCGCUgCa---ACUGGCcGUGUGg -5'
23487 3' -56.4 NC_005259.1 + 18347 0.71 0.46635
Target:  5'- gUCGACGcCGACGgcGACauguGGCACAUg -3'
miRNA:   3'- -AGCUGCcGCUGCaaCUGg---CCGUGUGg -5'
23487 3' -56.4 NC_005259.1 + 44406 0.71 0.48583
Target:  5'- aCGuCGGUGccCGccUGACCGGCAgCGCCg -3'
miRNA:   3'- aGCuGCCGCu-GCa-ACUGGCCGU-GUGG- -5'
23487 3' -56.4 NC_005259.1 + 34569 0.71 0.48583
Target:  5'- cCGACGGCGAgGUUcucgGACaGGCAgACg -3'
miRNA:   3'- aGCUGCCGCUgCAA----CUGgCCGUgUGg -5'
23487 3' -56.4 NC_005259.1 + 51351 0.7 0.494722
Target:  5'- cUCGGauaugccCGGUGGC----ACCGGCACACCg -3'
miRNA:   3'- -AGCU-------GCCGCUGcaacUGGCCGUGUGG- -5'
23487 3' -56.4 NC_005259.1 + 974 0.7 0.505689
Target:  5'- cUCaACGGCGACGagacACCGGCA-GCCg -3'
miRNA:   3'- -AGcUGCCGCUGCaac-UGGCCGUgUGG- -5'
23487 3' -56.4 NC_005259.1 + 14650 0.7 0.522838
Target:  5'- aCGAUGGCGugGgcucagcccgacucgGGCCGcGUGCACUc -3'
miRNA:   3'- aGCUGCCGCugCaa-------------CUGGC-CGUGUGG- -5'
23487 3' -56.4 NC_005259.1 + 5068 0.7 0.525888
Target:  5'- aUCGugGGCcgggucGACG--GGCCGGUGuCACCg -3'
miRNA:   3'- -AGCugCCG------CUGCaaCUGGCCGU-GUGG- -5'
23487 3' -56.4 NC_005259.1 + 44491 0.7 0.540207
Target:  5'- -aGuuGGUGACGUaGACCGGggugcccuggccaccCACGCCg -3'
miRNA:   3'- agCugCCGCUGCAaCUGGCC---------------GUGUGG- -5'
23487 3' -56.4 NC_005259.1 + 1562 0.7 0.546384
Target:  5'- -gGGCGGUGACGcugUGAgCGcGCcccACACCg -3'
miRNA:   3'- agCUGCCGCUGCa--ACUgGC-CG---UGUGG- -5'
23487 3' -56.4 NC_005259.1 + 58980 0.7 0.546384
Target:  5'- cUCGuCGGCGACGgcGAgcUUGGCcuuuuCACCg -3'
miRNA:   3'- -AGCuGCCGCUGCaaCU--GGCCGu----GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.