miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23487 3' -56.4 NC_005259.1 + 13780 0.81 0.111684
Target:  5'- uUCGACGGCGACGagcagUGgugcgacaucACCGGCgaGCACCa -3'
miRNA:   3'- -AGCUGCCGCUGCa----AC----------UGGCCG--UGUGG- -5'
23487 3' -56.4 NC_005259.1 + 23656 0.81 0.123419
Target:  5'- cCGACGGCGACGgcugGACCgccgaccccgagcaGGCGCACg -3'
miRNA:   3'- aGCUGCCGCUGCaa--CUGG--------------CCGUGUGg -5'
23487 3' -56.4 NC_005259.1 + 41235 0.81 0.124419
Target:  5'- cUCGGCGGUGACGau--CCGGUGCGCCu -3'
miRNA:   3'- -AGCUGCCGCUGCaacuGGCCGUGUGG- -5'
23487 3' -56.4 NC_005259.1 + 21008 0.78 0.184984
Target:  5'- -gGGCGGCGACccUGACCGGCAgcugACCg -3'
miRNA:   3'- agCUGCCGCUGcaACUGGCCGUg---UGG- -5'
23487 3' -56.4 NC_005259.1 + 63842 0.78 0.189344
Target:  5'- uUCGAggcaagcgcguacCGGCGAgG-UGGCCGGCugGCCu -3'
miRNA:   3'- -AGCU-------------GCCGCUgCaACUGGCCGugUGG- -5'
23487 3' -56.4 NC_005259.1 + 61610 0.77 0.215789
Target:  5'- gUCGGCGGgGAacaGcaGACCGGCAcCGCCg -3'
miRNA:   3'- -AGCUGCCgCUg--CaaCUGGCCGU-GUGG- -5'
23487 3' -56.4 NC_005259.1 + 47951 0.76 0.250887
Target:  5'- aCGGCGGUGcCGaUGGCCGcCGCGCCg -3'
miRNA:   3'- aGCUGCCGCuGCaACUGGCcGUGUGG- -5'
23487 3' -56.4 NC_005259.1 + 10581 0.75 0.270137
Target:  5'- cUCGACGGCGAaaucgucguUGUUGACCugagcgaGCACACg -3'
miRNA:   3'- -AGCUGCCGCU---------GCAACUGGc------CGUGUGg -5'
23487 3' -56.4 NC_005259.1 + 14556 0.75 0.276813
Target:  5'- cCGGCaGGCcgaGCGggGACCGGCgaACACCa -3'
miRNA:   3'- aGCUG-CCGc--UGCaaCUGGCCG--UGUGG- -5'
23487 3' -56.4 NC_005259.1 + 11863 0.75 0.29763
Target:  5'- cCGuCGGCGaACG-UGACCGcCGCACCg -3'
miRNA:   3'- aGCuGCCGC-UGCaACUGGCcGUGUGG- -5'
23487 3' -56.4 NC_005259.1 + 43660 0.75 0.29763
Target:  5'- cCGACGGUGuCGUUG-CCGauCACACCg -3'
miRNA:   3'- aGCUGCCGCuGCAACuGGCc-GUGUGG- -5'
23487 3' -56.4 NC_005259.1 + 36377 0.74 0.304833
Target:  5'- gUCGaaGCGGCGAgGUUGGCCaGCGCGa- -3'
miRNA:   3'- -AGC--UGCCGCUgCAACUGGcCGUGUgg -5'
23487 3' -56.4 NC_005259.1 + 13673 0.74 0.325712
Target:  5'- aUCGACGGUGugcuCGUggacccgUGGCCGGUcgaccccgccucgACACCg -3'
miRNA:   3'- -AGCUGCCGCu---GCA-------ACUGGCCG-------------UGUGG- -5'
23487 3' -56.4 NC_005259.1 + 22196 0.74 0.33498
Target:  5'- gCGACcuuGCaGACGUUGGCCaccGCGCACCg -3'
miRNA:   3'- aGCUGc--CG-CUGCAACUGGc--CGUGUGG- -5'
23487 3' -56.4 NC_005259.1 + 8331 0.74 0.33498
Target:  5'- cCGACGGCGAUca--GCCGGuCACGCUg -3'
miRNA:   3'- aGCUGCCGCUGcaacUGGCC-GUGUGG- -5'
23487 3' -56.4 NC_005259.1 + 14054 0.73 0.350852
Target:  5'- aUCGuCGGCGACGa-GACCaGCACGgCg -3'
miRNA:   3'- -AGCuGCCGCUGCaaCUGGcCGUGUgG- -5'
23487 3' -56.4 NC_005259.1 + 35993 0.73 0.350852
Target:  5'- cCGACGGCGA----GGCCGGacuGCACCg -3'
miRNA:   3'- aGCUGCCGCUgcaaCUGGCCg--UGUGG- -5'
23487 3' -56.4 NC_005259.1 + 55104 0.73 0.36725
Target:  5'- cCGAUGGCGGCGaaaaaUGcACCGGC-UGCCg -3'
miRNA:   3'- aGCUGCCGCUGCa----AC-UGGCCGuGUGG- -5'
23487 3' -56.4 NC_005259.1 + 36802 0.72 0.392818
Target:  5'- gCGuCGGCauUGUUGACCGGCGCGgUg -3'
miRNA:   3'- aGCuGCCGcuGCAACUGGCCGUGUgG- -5'
23487 3' -56.4 NC_005259.1 + 26636 0.72 0.401594
Target:  5'- aUCGAUGGCcuGGCGUgcgcucggcagGuuCGGCGCACCc -3'
miRNA:   3'- -AGCUGCCG--CUGCAa----------CugGCCGUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.