miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23487 3' -56.4 NC_005259.1 + 159 0.67 0.714205
Target:  5'- cUCGccCGGCGGgGU---CCGGCACcACCg -3'
miRNA:   3'- -AGCu-GCCGCUgCAacuGGCCGUG-UGG- -5'
23487 3' -56.4 NC_005259.1 + 974 0.7 0.505689
Target:  5'- cUCaACGGCGACGagacACCGGCA-GCCg -3'
miRNA:   3'- -AGcUGCCGCUGCaac-UGGCCGUgUGG- -5'
23487 3' -56.4 NC_005259.1 + 1237 0.66 0.774267
Target:  5'- -gGACGGCuGCaa-GACCGGCcucgGCAUCa -3'
miRNA:   3'- agCUGCCGcUGcaaCUGGCCG----UGUGG- -5'
23487 3' -56.4 NC_005259.1 + 1562 0.7 0.546384
Target:  5'- -gGGCGGUGACGcugUGAgCGcGCcccACACCg -3'
miRNA:   3'- agCUGCCGCUGCa--ACUgGC-CG---UGUGG- -5'
23487 3' -56.4 NC_005259.1 + 4343 0.68 0.61971
Target:  5'- cUCGucGCGGUGAUGagcgccgGA-CGGCACGCCc -3'
miRNA:   3'- -AGC--UGCCGCUGCaa-----CUgGCCGUGUGG- -5'
23487 3' -56.4 NC_005259.1 + 5068 0.7 0.525888
Target:  5'- aUCGugGGCcgggucGACG--GGCCGGUGuCACCg -3'
miRNA:   3'- -AGCugCCG------CUGCaaCUGGCCGU-GUGG- -5'
23487 3' -56.4 NC_005259.1 + 6312 0.72 0.428655
Target:  5'- gUCGACGGCauGACcuaccUUGcCgGGCACACCc -3'
miRNA:   3'- -AGCUGCCG--CUGc----AACuGgCCGUGUGG- -5'
23487 3' -56.4 NC_005259.1 + 8331 0.74 0.33498
Target:  5'- cCGACGGCGAUca--GCCGGuCACGCUg -3'
miRNA:   3'- aGCUGCCGCUGcaacUGGCC-GUGUGG- -5'
23487 3' -56.4 NC_005259.1 + 8369 0.71 0.447282
Target:  5'- cUCGGCGGCGGCcucgGcAUCGGCGagaGCCu -3'
miRNA:   3'- -AGCUGCCGCUGcaa-C-UGGCCGUg--UGG- -5'
23487 3' -56.4 NC_005259.1 + 8949 0.68 0.651442
Target:  5'- -gGugGGCGcgcCGUgGACgGGCACcguGCCg -3'
miRNA:   3'- agCugCCGCu--GCAaCUGgCCGUG---UGG- -5'
23487 3' -56.4 NC_005259.1 + 10493 0.66 0.774267
Target:  5'- gUCGugGuuguUGGgGUUGuCCGGCACggGCCa -3'
miRNA:   3'- -AGCugCc---GCUgCAACuGGCCGUG--UGG- -5'
23487 3' -56.4 NC_005259.1 + 10581 0.75 0.270137
Target:  5'- cUCGACGGCGAaaucgucguUGUUGACCugagcgaGCACACg -3'
miRNA:   3'- -AGCUGCCGCU---------GCAACUGGc------CGUGUGg -5'
23487 3' -56.4 NC_005259.1 + 11119 0.68 0.640869
Target:  5'- gCGACGGUGACG--GugCGaGCcguCGCCu -3'
miRNA:   3'- aGCUGCCGCUGCaaCugGC-CGu--GUGG- -5'
23487 3' -56.4 NC_005259.1 + 11295 0.68 0.634521
Target:  5'- -gGACGGuCGACGggcgugaggccgaGACgGGCGCGCa -3'
miRNA:   3'- agCUGCC-GCUGCaa-----------CUGgCCGUGUGg -5'
23487 3' -56.4 NC_005259.1 + 11775 0.68 0.60914
Target:  5'- cUCGACGGCGAgGgaGuCCcacacaucgGGCGCgACCc -3'
miRNA:   3'- -AGCUGCCGCUgCaaCuGG---------CCGUG-UGG- -5'
23487 3' -56.4 NC_005259.1 + 11863 0.75 0.29763
Target:  5'- cCGuCGGCGaACG-UGACCGcCGCACCg -3'
miRNA:   3'- aGCuGCCGC-UGCaACUGGCcGUGUGG- -5'
23487 3' -56.4 NC_005259.1 + 12181 0.69 0.59859
Target:  5'- gUCGAaccugcCGGacCGugGUcguguagagaUGcACCGGCGCACCg -3'
miRNA:   3'- -AGCU------GCC--GCugCA----------AC-UGGCCGUGUGG- -5'
23487 3' -56.4 NC_005259.1 + 13117 0.66 0.754682
Target:  5'- cUCGGCGGCuAC---GACCaGCGCACg -3'
miRNA:   3'- -AGCUGCCGcUGcaaCUGGcCGUGUGg -5'
23487 3' -56.4 NC_005259.1 + 13230 0.67 0.714205
Target:  5'- cUCGAcCGGCcacCGUgagGGCCGaGCAC-CCg -3'
miRNA:   3'- -AGCU-GCCGcu-GCAa--CUGGC-CGUGuGG- -5'
23487 3' -56.4 NC_005259.1 + 13673 0.74 0.325712
Target:  5'- aUCGACGGUGugcuCGUggacccgUGGCCGGUcgaccccgccucgACACCg -3'
miRNA:   3'- -AGCUGCCGCu---GCA-------ACUGGCCG-------------UGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.