miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23487 3' -56.4 NC_005259.1 + 68802 0.67 0.67253
Target:  5'- -gGGCGGUGuCGgUGcCCGGUACAUg -3'
miRNA:   3'- agCUGCCGCuGCaACuGGCCGUGUGg -5'
23487 3' -56.4 NC_005259.1 + 67044 0.68 0.6451
Target:  5'- cUCGACGGCGAgcaccCGUgcgccgaucucaagGGCCaGCgugACGCCg -3'
miRNA:   3'- -AGCUGCCGCU-----GCAa-------------CUGGcCG---UGUGG- -5'
23487 3' -56.4 NC_005259.1 + 66144 0.69 0.577576
Target:  5'- -aGACGGCGuGCGUUGGCauccugUGuGCGCGCa -3'
miRNA:   3'- agCUGCCGC-UGCAACUG------GC-CGUGUGg -5'
23487 3' -56.4 NC_005259.1 + 65206 0.67 0.703873
Target:  5'- -gGugGGUauucGAUGaUGACCGGcCugACCu -3'
miRNA:   3'- agCugCCG----CUGCaACUGGCC-GugUGG- -5'
23487 3' -56.4 NC_005259.1 + 64612 0.69 0.577576
Target:  5'- cUGACGGCGAgCGc-GACgGGCagcaGCGCCc -3'
miRNA:   3'- aGCUGCCGCU-GCaaCUGgCCG----UGUGG- -5'
23487 3' -56.4 NC_005259.1 + 64572 0.72 0.401594
Target:  5'- cUCGGuguCGGCGAaacgGGCCaGCACACCa -3'
miRNA:   3'- -AGCU---GCCGCUgcaaCUGGcCGUGUGG- -5'
23487 3' -56.4 NC_005259.1 + 63842 0.78 0.189344
Target:  5'- uUCGAggcaagcgcguacCGGCGAgG-UGGCCGGCugGCCu -3'
miRNA:   3'- -AGCU-------------GCCGCUgCaACUGGCCGugUGG- -5'
23487 3' -56.4 NC_005259.1 + 63639 0.72 0.419515
Target:  5'- aUCG-UGGCGAgcugcuCGcUGGCCGGgACGCCg -3'
miRNA:   3'- -AGCuGCCGCU------GCaACUGGCCgUGUGG- -5'
23487 3' -56.4 NC_005259.1 + 61610 0.77 0.215789
Target:  5'- gUCGGCGGgGAacaGcaGACCGGCAcCGCCg -3'
miRNA:   3'- -AGCUGCCgCUg--CaaCUGGCCGU-GUGG- -5'
23487 3' -56.4 NC_005259.1 + 61032 0.72 0.418607
Target:  5'- gUGGCGGCGAgGUcGACCgacgggcGGCuCACCu -3'
miRNA:   3'- aGCUGCCGCUgCAaCUGG-------CCGuGUGG- -5'
23487 3' -56.4 NC_005259.1 + 60822 0.68 0.640869
Target:  5'- aUCGuCGGCGAU----GCUGGC-CACCa -3'
miRNA:   3'- -AGCuGCCGCUGcaacUGGCCGuGUGG- -5'
23487 3' -56.4 NC_005259.1 + 60649 0.67 0.714205
Target:  5'- uUCGACGGUGAUuucggGGCCaugacGCACGCg -3'
miRNA:   3'- -AGCUGCCGCUGcaa--CUGGc----CGUGUGg -5'
23487 3' -56.4 NC_005259.1 + 58980 0.7 0.546384
Target:  5'- cUCGuCGGCGACGgcGAgcUUGGCcuuuuCACCg -3'
miRNA:   3'- -AGCuGCCGCUGCaaCU--GGCCGu----GUGG- -5'
23487 3' -56.4 NC_005259.1 + 58727 0.68 0.60914
Target:  5'- cCGGgGGUGuCGUUGgcACCGGCACcgGCg -3'
miRNA:   3'- aGCUgCCGCuGCAAC--UGGCCGUG--UGg -5'
23487 3' -56.4 NC_005259.1 + 57534 0.68 0.651442
Target:  5'- cCGACGGCGAUGgcGuccUCGGUgaACAUCc -3'
miRNA:   3'- aGCUGCCGCUGCaaCu--GGCCG--UGUGG- -5'
23487 3' -56.4 NC_005259.1 + 57458 0.68 0.640869
Target:  5'- gCGACGcuGCGGCa--GGCCGGUgGCACCg -3'
miRNA:   3'- aGCUGC--CGCUGcaaCUGGCCG-UGUGG- -5'
23487 3' -56.4 NC_005259.1 + 57267 0.68 0.661999
Target:  5'- cCGuugGGCGAgGgauUGACCGGUGgCACCu -3'
miRNA:   3'- aGCug-CCGCUgCa--ACUGGCCGU-GUGG- -5'
23487 3' -56.4 NC_005259.1 + 55104 0.73 0.36725
Target:  5'- cCGAUGGCGGCGaaaaaUGcACCGGC-UGCCg -3'
miRNA:   3'- aGCUGCCGCUGCa----AC-UGGCCGuGUGG- -5'
23487 3' -56.4 NC_005259.1 + 54509 0.68 0.6451
Target:  5'- aUGGCGGCGAUGUggGGuggcgggucgaguauCCGGCccaGCCa -3'
miRNA:   3'- aGCUGCCGCUGCAa-CU---------------GGCCGug-UGG- -5'
23487 3' -56.4 NC_005259.1 + 54200 0.71 0.447282
Target:  5'- -aGGCGGCGGCccUUGACgGGCuggAUACCg -3'
miRNA:   3'- agCUGCCGCUGc-AACUGgCCG---UGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.