Results 1 - 20 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23487 | 3' | -56.4 | NC_005259.1 | + | 47802 | 0.66 | 0.774267 |
Target: 5'- cCGACGGUGAguCGcgaGACCucgcgGGC-CACCg -3' miRNA: 3'- aGCUGCCGCU--GCaa-CUGG-----CCGuGUGG- -5' |
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23487 | 3' | -56.4 | NC_005259.1 | + | 13673 | 0.74 | 0.325712 |
Target: 5'- aUCGACGGUGugcuCGUggacccgUGGCCGGUcgaccccgccucgACACCg -3' miRNA: 3'- -AGCUGCCGCu---GCA-------ACUGGCCG-------------UGUGG- -5' |
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23487 | 3' | -56.4 | NC_005259.1 | + | 22196 | 0.74 | 0.33498 |
Target: 5'- gCGACcuuGCaGACGUUGGCCaccGCGCACCg -3' miRNA: 3'- aGCUGc--CG-CUGCAACUGGc--CGUGUGG- -5' |
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23487 | 3' | -56.4 | NC_005259.1 | + | 8331 | 0.74 | 0.33498 |
Target: 5'- cCGACGGCGAUca--GCCGGuCACGCUg -3' miRNA: 3'- aGCUGCCGCUGcaacUGGCC-GUGUGG- -5' |
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23487 | 3' | -56.4 | NC_005259.1 | + | 35993 | 0.73 | 0.350852 |
Target: 5'- cCGACGGCGA----GGCCGGacuGCACCg -3' miRNA: 3'- aGCUGCCGCUgcaaCUGGCCg--UGUGG- -5' |
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23487 | 3' | -56.4 | NC_005259.1 | + | 14054 | 0.73 | 0.350852 |
Target: 5'- aUCGuCGGCGACGa-GACCaGCACGgCg -3' miRNA: 3'- -AGCuGCCGCUGCaaCUGGcCGUGUgG- -5' |
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23487 | 3' | -56.4 | NC_005259.1 | + | 55104 | 0.73 | 0.36725 |
Target: 5'- cCGAUGGCGGCGaaaaaUGcACCGGC-UGCCg -3' miRNA: 3'- aGCUGCCGCUGCa----AC-UGGCCGuGUGG- -5' |
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23487 | 3' | -56.4 | NC_005259.1 | + | 36802 | 0.72 | 0.392818 |
Target: 5'- gCGuCGGCauUGUUGACCGGCGCGgUg -3' miRNA: 3'- aGCuGCCGcuGCAACUGGCCGUGUgG- -5' |
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23487 | 3' | -56.4 | NC_005259.1 | + | 15664 | 0.72 | 0.401594 |
Target: 5'- aCGACGGCGACGgucucaccucgaUUGACUGGUcucagaucgaGCCg -3' miRNA: 3'- aGCUGCCGCUGC------------AACUGGCCGug--------UGG- -5' |
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23487 | 3' | -56.4 | NC_005259.1 | + | 36377 | 0.74 | 0.304833 |
Target: 5'- gUCGaaGCGGCGAgGUUGGCCaGCGCGa- -3' miRNA: 3'- -AGC--UGCCGCUgCAACUGGcCGUGUgg -5' |
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23487 | 3' | -56.4 | NC_005259.1 | + | 11863 | 0.75 | 0.29763 |
Target: 5'- cCGuCGGCGaACG-UGACCGcCGCACCg -3' miRNA: 3'- aGCuGCCGC-UGCaACUGGCcGUGUGG- -5' |
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23487 | 3' | -56.4 | NC_005259.1 | + | 43660 | 0.75 | 0.29763 |
Target: 5'- cCGACGGUGuCGUUG-CCGauCACACCg -3' miRNA: 3'- aGCUGCCGCuGCAACuGGCc-GUGUGG- -5' |
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23487 | 3' | -56.4 | NC_005259.1 | + | 23656 | 0.81 | 0.123419 |
Target: 5'- cCGACGGCGACGgcugGACCgccgaccccgagcaGGCGCACg -3' miRNA: 3'- aGCUGCCGCUGCaa--CUGG--------------CCGUGUGg -5' |
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23487 | 3' | -56.4 | NC_005259.1 | + | 41235 | 0.81 | 0.124419 |
Target: 5'- cUCGGCGGUGACGau--CCGGUGCGCCu -3' miRNA: 3'- -AGCUGCCGCUGCaacuGGCCGUGUGG- -5' |
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23487 | 3' | -56.4 | NC_005259.1 | + | 21008 | 0.78 | 0.184984 |
Target: 5'- -gGGCGGCGACccUGACCGGCAgcugACCg -3' miRNA: 3'- agCUGCCGCUGcaACUGGCCGUg---UGG- -5' |
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23487 | 3' | -56.4 | NC_005259.1 | + | 63842 | 0.78 | 0.189344 |
Target: 5'- uUCGAggcaagcgcguacCGGCGAgG-UGGCCGGCugGCCu -3' miRNA: 3'- -AGCU-------------GCCGCUgCaACUGGCCGugUGG- -5' |
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23487 | 3' | -56.4 | NC_005259.1 | + | 61610 | 0.77 | 0.215789 |
Target: 5'- gUCGGCGGgGAacaGcaGACCGGCAcCGCCg -3' miRNA: 3'- -AGCUGCCgCUg--CaaCUGGCCGU-GUGG- -5' |
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23487 | 3' | -56.4 | NC_005259.1 | + | 47951 | 0.76 | 0.250887 |
Target: 5'- aCGGCGGUGcCGaUGGCCGcCGCGCCg -3' miRNA: 3'- aGCUGCCGCuGCaACUGGCcGUGUGG- -5' |
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23487 | 3' | -56.4 | NC_005259.1 | + | 10581 | 0.75 | 0.270137 |
Target: 5'- cUCGACGGCGAaaucgucguUGUUGACCugagcgaGCACACg -3' miRNA: 3'- -AGCUGCCGCU---------GCAACUGGc------CGUGUGg -5' |
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23487 | 3' | -56.4 | NC_005259.1 | + | 14556 | 0.75 | 0.276813 |
Target: 5'- cCGGCaGGCcgaGCGggGACCGGCgaACACCa -3' miRNA: 3'- aGCUG-CCGc--UGCaaCUGGCCG--UGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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