miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23487 3' -56.4 NC_005259.1 + 36080 0.67 0.703873
Target:  5'- cUCGucGCGGUGcUGUUGAgCGacaGCACGCCc -3'
miRNA:   3'- -AGC--UGCCGCuGCAACUgGC---CGUGUGG- -5'
23487 3' -56.4 NC_005259.1 + 47250 0.67 0.703873
Target:  5'- gUCGAccagcgcuCGGUGACGcguuCCaGCGCACCg -3'
miRNA:   3'- -AGCU--------GCCGCUGCaacuGGcCGUGUGG- -5'
23487 3' -56.4 NC_005259.1 + 41193 0.67 0.703873
Target:  5'- aUCGAUGGUGAugcCGUUG-UCGGUguggaucgucACGCCc -3'
miRNA:   3'- -AGCUGCCGCU---GCAACuGGCCG----------UGUGG- -5'
23487 3' -56.4 NC_005259.1 + 52565 0.67 0.700761
Target:  5'- cCGACauGGuCGACcg-GACCGGCcugagcgucgccgaGCACCa -3'
miRNA:   3'- aGCUG--CC-GCUGcaaCUGGCCG--------------UGUGG- -5'
23487 3' -56.4 NC_005259.1 + 41100 0.67 0.693477
Target:  5'- gUCGGCGGuCGGCGguaUGACgaugucggCGGUGC-CCg -3'
miRNA:   3'- -AGCUGCC-GCUGCa--ACUG--------GCCGUGuGG- -5'
23487 3' -56.4 NC_005259.1 + 46182 0.67 0.693477
Target:  5'- -gGGCGcGuCGAUGUUGAUgGGCACcucuuugggaACCg -3'
miRNA:   3'- agCUGC-C-GCUGCAACUGgCCGUG----------UGG- -5'
23487 3' -56.4 NC_005259.1 + 34028 0.67 0.683026
Target:  5'- cUCGGCGGCGuGCGUcGGCgcguucuuguUGGCAUuguCCg -3'
miRNA:   3'- -AGCUGCCGC-UGCAaCUG----------GCCGUGu--GG- -5'
23487 3' -56.4 NC_005259.1 + 41374 0.67 0.683026
Target:  5'- gCGuGCGGuCGAgcUUGGCCGGUAC-CCa -3'
miRNA:   3'- aGC-UGCC-GCUgcAACUGGCCGUGuGG- -5'
23487 3' -56.4 NC_005259.1 + 68802 0.67 0.67253
Target:  5'- -gGGCGGUGuCGgUGcCCGGUACAUg -3'
miRNA:   3'- agCUGCCGCuGCaACuGGCCGUGUGg -5'
23487 3' -56.4 NC_005259.1 + 36930 0.68 0.661999
Target:  5'- cCGACGGUGAgUGUUGcugucACCGGggUGCCc -3'
miRNA:   3'- aGCUGCCGCU-GCAAC-----UGGCCguGUGG- -5'
23487 3' -56.4 NC_005259.1 + 38741 0.68 0.661999
Target:  5'- cCGGCGGUGGCccgccgcaGGCCGGUgaGCugCg -3'
miRNA:   3'- aGCUGCCGCUGcaa-----CUGGCCG--UGugG- -5'
23487 3' -56.4 NC_005259.1 + 32245 0.68 0.661999
Target:  5'- cUCGAUGaGauccaacaCGACGUgcaucGAUgGGCACGCCa -3'
miRNA:   3'- -AGCUGC-C--------GCUGCAa----CUGgCCGUGUGG- -5'
23487 3' -56.4 NC_005259.1 + 57267 0.68 0.661999
Target:  5'- cCGuugGGCGAgGgauUGACCGGUGgCACCu -3'
miRNA:   3'- aGCug-CCGCUgCa--ACUGGCCGU-GUGG- -5'
23487 3' -56.4 NC_005259.1 + 57534 0.68 0.651442
Target:  5'- cCGACGGCGAUGgcGuccUCGGUgaACAUCc -3'
miRNA:   3'- aGCUGCCGCUGCaaCu--GGCCG--UGUGG- -5'
23487 3' -56.4 NC_005259.1 + 8949 0.68 0.651442
Target:  5'- -gGugGGCGcgcCGUgGACgGGCACcguGCCg -3'
miRNA:   3'- agCugCCGCu--GCAaCUGgCCGUG---UGG- -5'
23487 3' -56.4 NC_005259.1 + 44559 0.68 0.651442
Target:  5'- cCGGCaGGCaGCGcgccGACCGGCAgGCUc -3'
miRNA:   3'- aGCUG-CCGcUGCaa--CUGGCCGUgUGG- -5'
23487 3' -56.4 NC_005259.1 + 54509 0.68 0.6451
Target:  5'- aUGGCGGCGAUGUggGGuggcgggucgaguauCCGGCccaGCCa -3'
miRNA:   3'- aGCUGCCGCUGCAa-CU---------------GGCCGug-UGG- -5'
23487 3' -56.4 NC_005259.1 + 67044 0.68 0.6451
Target:  5'- cUCGACGGCGAgcaccCGUgcgccgaucucaagGGCCaGCgugACGCCg -3'
miRNA:   3'- -AGCUGCCGCU-----GCAa-------------CUGGcCG---UGUGG- -5'
23487 3' -56.4 NC_005259.1 + 60822 0.68 0.640869
Target:  5'- aUCGuCGGCGAU----GCUGGC-CACCa -3'
miRNA:   3'- -AGCuGCCGCUGcaacUGGCCGuGUGG- -5'
23487 3' -56.4 NC_005259.1 + 57458 0.68 0.640869
Target:  5'- gCGACGcuGCGGCa--GGCCGGUgGCACCg -3'
miRNA:   3'- aGCUGC--CGCUGcaaCUGGCCG-UGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.